Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30977.Seq
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   2e-25
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        34   0.077
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   28   3.8  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   27   8.9  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  111 bits (268), Expect = 2e-25
 Identities = 51/59 (86%), Positives = 56/59 (94%)
 Frame = +2

Query: 257 ISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 433
           ISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 49  ISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107



 Score = 62.5 bits (145), Expect(2) = 1e-10
 Identities = 27/41 (65%), Positives = 34/41 (82%)
 Frame = +3

Query: 144 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQLFQR 266
           K++EPILLLGKE+F  VDIRV VKGGGH +++YAIRQ   +
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51



 Score = 20.6 bits (41), Expect(2) = 1e-10
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 18 QAVQVFGRK 44
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +2

Query: 236 SLRYQTTISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 379
           +++++T +   L AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 43  AVKHKTHVDTVL-AFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 188 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 102
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 221 WSCSTSLRYQTTISKA 268
           WSCSTS+R +T+I KA
Sbjct: 155 WSCSTSMRNRTSIFKA 170


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 80  SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 193
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = -3

Query: 251 SDSVNLCYMTTTLDCHSDVNHR-----EFFLAEQKDRFL 150
           S++  LCY+ T ++C  D+ H+     E  LA++K + L
Sbjct: 582 SEAEKLCYIETRVECLMDMGHKCSTSTELSLADRKAKVL 620


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,463,057
Number of Sequences: 59808
Number of extensions: 351913
Number of successful extensions: 1007
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)