Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30977.Seq
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 113 5e-26
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 113 5e-26
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 112 1e-25
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 39 0.002
At1g43570.1 68414.m05001 hypothetical protein 31 0.34
At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containi... 29 1.8
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 5.5
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55... 27 7.3
At3g24255.1 68416.m03045 expressed protein 27 7.3
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 27 7.3
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 27 9.6
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat... 27 9.6
At4g11090.1 68417.m01801 expressed protein other hypothetical pr... 27 9.6
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s... 27 9.6
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 113 bits (273), Expect = 5e-26
Identities = 51/60 (85%), Positives = 58/60 (96%)
Frame = +2
Query: 254 TISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 433
+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 109 bits (262), Expect = 1e-24
Identities = 45/79 (56%), Positives = 66/79 (83%)
Frame = +3
Query: 18 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 197
++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+ V+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67
Query: 198 IRVTVKGGGHVAQVYAIRQ 254
+R+ V GGGH +QVYAIRQ
Sbjct: 68 MRIRVNGGGHTSQVYAIRQ 86
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 113 bits (273), Expect = 5e-26
Identities = 51/60 (85%), Positives = 58/60 (96%)
Frame = +2
Query: 254 TISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 433
+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 109 bits (263), Expect = 8e-25
Identities = 46/79 (58%), Positives = 66/79 (83%)
Frame = +3
Query: 18 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 197
++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK +F+ V+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67
Query: 198 IRVTVKGGGHVAQVYAIRQ 254
+R+ V GGGH +QVYAIRQ
Sbjct: 68 MRIRVNGGGHTSQVYAIRQ 86
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 112 bits (270), Expect = 1e-25
Identities = 50/60 (83%), Positives = 58/60 (96%)
Frame = +2
Query: 254 TISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 433
+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
Score = 111 bits (266), Expect = 3e-25
Identities = 46/79 (58%), Positives = 66/79 (83%)
Frame = +3
Query: 18 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 197
++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 198 IRVTVKGGGHVAQVYAIRQ 254
+R+ GGG+ ++VYAIRQ
Sbjct: 68 MRIRATGGGNTSRVYAIRQ 86
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 36 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 215
GR+K + A + + G G +VN + D+ P +L ++ L + DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 216 GGGHVAQVYAIR 251
GGG QV AI+
Sbjct: 369 GGGTTGQVGAIQ 380
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 375 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 268
+R S T + LSYC R+ LI S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 477
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 233 TSLRYQTTISKALIAFYQKYVDEAS-KKEIKDILVQYDRSLLVADPRRCEPKKF 391
++LR+ TT+S A + Q ++ +KE+ VQ D S + RRC+P +F
Sbjct: 22 SALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDSSCINEVLRRCDPNQF 75
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 224 SCSTSLRYQTTISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 355
SC R+Q + AL F+Q++ AS IL Y+R LL
Sbjct: 1563 SCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606
>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 253
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 248 QTTISKALIAFYQK--YVDEASKKEIKDIL 331
++ + L+ FY K Y DE + EIKDIL
Sbjct: 99 ESVVHAKLLVFYMKKLYADEKFRYEIKDIL 128
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 372 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 268
R G T++ LS+ R+ LIS S T FW A R
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 176
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 168 LGKEKFSMVDIRVTVKGGGHVAQVYAIRQLFQ 263
+G E+ V I ++ GGGH A AIR F+
Sbjct: 67 MGAERIKTVLILMSDTGGGHRASAEAIRDAFK 98
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 159 ILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQLFQ 263
++ +G E+ V I ++ GGGH A AIR F+
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK 94
>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
/ citrate hydro-lyase/aconitase, putative strong
similarity to SP|P49608 Aconitate hydratase, cytoplasmic
(EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
{Cucurbita maxima}; contains Pfam profiles PF00330:
Aconitase family (aconitate hydratase), PF00694:
Aconitase C-terminal domain
Length = 995
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 215 GWWSCSTSLRYQTTISKALIA-FYQKYVDEASKKEIKDIL 331
G W SLR Q S ++ F +KY AS+ KDIL
Sbjct: 69 GSWGSPASLRAQARNSTPVMEKFERKYATMASEHSYKDIL 108
>At4g11090.1 68417.m01801 expressed protein other hypothetical
proteins - Arabidopsis thaliana
Length = 432
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +1
Query: 109 HWTWLSPDCCSTNFRNLSFCSARKNSLW 192
+W W DC F +L F +N W
Sbjct: 122 NWKWKPNDCSLPRFDSLRFLQLMRNKSW 149
>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
similar to exostose-related protein 2, Homo sapiens,
PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
[GI:10443633]
Length = 334
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 215 GWWSCSTSLRYQTTISKALIAFYQKYV 295
GWWS S Y +SKA F++KY+
Sbjct: 214 GWWSVWWSGTYSMVLSKAAF-FHKKYL 239
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,056,585
Number of Sequences: 28952
Number of extensions: 240511
Number of successful extensions: 714
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -