Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30976.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    28   5.6  
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297...    27   7.5  
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487...    27   7.5  
06_01_0091 - 749409-749846                                             27   9.9  
04_04_0340 + 24517562-24520318                                         27   9.9  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 301 DSLGVGSYG*TNXNSWKGXPSYVPLGSISLEGIVSEXXNMSVGIFPW 441
           D +G G+YG            +V +  +SLE I  E  N+ +  F W
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>10_08_0105 -
           14828097-14828226,14828371-14828547,14829690-14829739,
           14829841-14829909,14829976-14830074,14830148-14830226,
           14830587-14830687,14830794-14830862,14831019-14831059,
           14831313-14831663,14831676-14832511,14832674-14832777,
           14833587-14834003,14836108-14836491
          Length = 968

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 546 SCKGYPCPVSDNASSTDLHSSRRLFPDGR 460
           S +GY   V +N  + D H + RL PD R
Sbjct: 616 SMQGYSPEVKENKENYDRHDNMRLHPDPR 644


>03_06_0621 -
           35147070-35148359,35148499-35148579,35148665-35148741,
           35148792-35149298,35149405-35150278
          Length = 942

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 377 PKGTYDGXPFQLFXFVXPYXPTPKESEPFKSVVPDNKPFGYHSIAPFFLSTSNNLTCSSR 198
           P  + DG P+ L      + PTPK++   +S    N PF +      F      L+C+S 
Sbjct: 275 PGNSDDGNPYLLDDCKQEFNPTPKKN-CSRSCGSTNIPFPFGLEPGCFAKRRFQLSCASN 333

Query: 197 RS 192
           R+
Sbjct: 334 RT 335


>06_01_0091 - 749409-749846
          Length = 145

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 311 PKESEPFKSVVPDNKPF-GYHSIAPF 237
           P E EP     P+N PF G+HS+  F
Sbjct: 113 PPEPEPSPEPSPENDPFHGFHSLHSF 138


>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/74 (20%), Positives = 37/74 (50%)
 Frame = -1

Query: 233 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRIS 54
           L+T  +   +  RSW  +++ +SP+     TI+ +     A   KS+    +   ++ ++
Sbjct: 169 LATIRSRKEADNRSWCIVEQVFSPLLKLLKTINHLVSEAAARNNKSENYKILVKIDAEVN 228

Query: 53  CEYVKTVANVINKN 12
           C  ++   ++I++N
Sbjct: 229 C--LQDALDLIDRN 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,961
Number of Sequences: 37544
Number of extensions: 225615
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)