Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30976.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera...    29   2.7  
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   2.7  

>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
            putative similar to Swiss-Prot:P05055 polyribonucleotide
            nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
            phosphorylase) (PNPase) [Escherichia coli]
          Length = 991

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
 Frame = -1

Query: 314  TPKESEPFKSVVPDN---------KPFG-YHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 165
            T KE E  +S+ P+          K  G   S++P   ST++NL   S+   STMKEN S
Sbjct: 848  TQKEEEALESIAPEETSAECGEILKQDGKLKSVSPKNNSTASNLVSFSKAKKSTMKENLS 907


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 280  TTDLNGSDSLGVGSYG*TNXNSWKGXPSYVPLGSISLEGIVSEXXNMSV 426
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE  N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,610
Number of Sequences: 28952
Number of extensions: 188706
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)