Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30975.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   88   6e-18
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   4e-16
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   4e-16
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  78   5e-15
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      70   2e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               65   5e-11
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              49   2e-06
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              46   2e-05
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            38   0.006
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)             36   0.033
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   29   2.2  
SB_52330| Best HMM Match : MCM (HMM E-Value=0)                         29   2.2  
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)                 29   2.9  
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                29   3.8  
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)                     28   5.0  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              28   6.6  
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                27   8.7  

>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 37/72 (51%), Positives = 59/72 (81%)
 Frame = +1

Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
           +K + +++PAAK+LVEL+++QD+EVGDGTTSV ++ +ELLK A++LV  KIHP +I++G+
Sbjct: 68  LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGW 127

Query: 427 RLACKEAVKYIQ 462
           R + K A K ++
Sbjct: 128 RKSVKAAEKALE 139



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
 Frame = +2

Query: 152 NIVKSSLGPVGLDKMLVD--DIGDVTVTNDGATILKS 256
           ++VKS+LGP G+DK+L      G++ VTNDGATILKS
Sbjct: 34  DLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKS 70


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 32/75 (42%), Positives = 57/75 (76%)
 Frame = +1

Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
           +++++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ Y
Sbjct: 9   LREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAY 68

Query: 427 RLACKEAVKYIQDNL 471
           RLA  + +  ++  +
Sbjct: 69  RLAMDDMIDILKQQI 83


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 33/73 (45%), Positives = 55/73 (75%)
 Frame = +1

Query: 253 KLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRL 432
           K++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ YRL
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 433 ACKEAVKYIQDNL 471
           A  + +  ++  +
Sbjct: 268 AMDDMIDILKQQI 280


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 6/92 (6%)
 Frame = +1

Query: 256 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 435
           +EV+H  AK++VEL++ QD E+GDGTT VV++A  LL++A++L+   IHP  I  GY LA
Sbjct: 79  MEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELA 138

Query: 436 CKEAVKY---IQDNLTV---TVESLGRPSLTT 513
            K A+++   I DN  V     ESL + ++TT
Sbjct: 139 AKIALEHMDSIADNFPVDKDNKESLIQTAMTT 170



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +2

Query: 116 RTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 250
           +  +++      +I+K+SLGP G+DKM+V   G+VTVTNDGATIL
Sbjct: 32  KQSHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATIL 76


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/56 (53%), Positives = 46/56 (82%)
 Frame = +1

Query: 295 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 462
           L+++QD+EVGDGTTSV ++A+ELLK A++LV  KIHP +I++G+R + K A K ++
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 27/75 (36%), Positives = 48/75 (64%)
 Frame = +1

Query: 241 HNIKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 420
           + ++  +++HP A ++  +A  QD+  GDGTTS V+I  ELLK AD  V   +HP  +  
Sbjct: 164 NGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223

Query: 421 GYRLACKEAVKYIQD 465
           G+ +A K+A++ +++
Sbjct: 224 GFEVAKKKALEVLEE 238


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 21/45 (46%), Positives = 30/45 (66%)
 Frame = +2

Query: 113 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 247
           +R  N+       + +++SLGP G+DKM+    GDVT+TNDGATI
Sbjct: 25  IRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +2

Query: 98  SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 250
           S G P    N+       + V+++LGP G+DK++VD  G  T++NDGATI+
Sbjct: 651 SQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATII 701



 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 247 IKKLEVEHPAAKVLVELAQLQDEE 318
           I  L++ HPAAK LV++A+ QD E
Sbjct: 701 INLLDIVHPAAKTLVDIAKSQDAE 724


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +2

Query: 155 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
           I+K S GP GLD ML    G++ +TN G+ IL+S
Sbjct: 15  ILKKSFGPNGLDVMLRSSSGNILITNSGSMILES 48


>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
          Length = 131

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +2

Query: 527 LSSKLIGADADFFSEMVVDAAQAI 598
           LSSKLIG   DFF+ M+VDA  A+
Sbjct: 21  LSSKLIGQQGDFFANMIVDAVMAV 44


>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 358 ELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 471
           E +  A+  ++ ++HPT II+ YRLA  + +  ++  +
Sbjct: 3   EFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40


>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 527 LSSKLIGADADFFSEMVVDAAQAI 598
           LSSKLI    +FF++MVVDA   +
Sbjct: 32  LSSKLIATQKEFFAKMVVDAVMML 55


>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
 Frame = -1

Query: 235 IVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWVSA----GSCPC 86
           +     +PN +   +  T  PKG   Y C  +C +   C H  +     G+C C
Sbjct: 70  VTQGTTVPNAIEGEICNTRCPKGYYGYGCSKKCSN---CQHGATCDPVNGTCSC 120


>SB_52330| Best HMM Match : MCM (HMM E-Value=0)
          Length = 368

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 191 KMLVDDIGDVTVTNDGATI-LKSWKWS 268
           KMLVD + D  + NDG  + LKSWK S
Sbjct: 316 KMLVDKVLDRLIHNDGVILELKSWKES 342


>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
          Length = 472

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 244 CGTIVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWV 107
           C  + +DCN        L      +G     CY  CC   LC+++V
Sbjct: 388 CSVVSADCNENGTRCDRLTSVLKDRGLTLKNCYVNCCQGDLCNNFV 433


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 253 KLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 420
           K + ++  A+++ ++A   +EE GDGTT+  ++A  +       V    +P  + S
Sbjct: 119 KDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVSS 174


>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
          Length = 197

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 310 DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYI 459
           DE+V DG     I+AAE + +    +     PTS+ +GY +A    V+ I
Sbjct: 98  DEDVPDGAP---IVAAEAVNSTSLRINCTTLPTSVANGYVIAFNVYVESI 144


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 160 YYVCYSRCCHYILCSHWVSAGSCPCYRQRCSYSRHFLLYF*H 35
           YY CY  C +Y  C ++     C CY   C Y  +   Y+ H
Sbjct: 477 YYYCYCYCYYY--CYYY-----CYCYCYYCCYYCYCYYYYHH 511


>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +1

Query: 238  CHNIKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSII 417
            CH  +  ++ HPA + LV     + E V     +     A +L N DE +   +   S+ 
Sbjct: 933  CHRGENCKLRHPACRYLVRPENTRQEAVSIRPQNDAHSYAAILANRDETLDHALLNNSVA 992

Query: 418  S 420
            S
Sbjct: 993  S 993


>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1357

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 34  CVKNTIKNVDYSCTFVCSRDKILRRPSENTKCNGSSGYSK 153
           CV+ T  N  + C   CS   + RR   NT C G + Y++
Sbjct: 731 CVRQTYDNRKFIC---CSGRVVPRRFGRNTSCCGFTPYNR 767


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,043,445
Number of Sequences: 59808
Number of extensions: 361781
Number of successful extensions: 859
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)