Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30975.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 129 1e-30
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 90 9e-19
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 80 1e-15
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 78 4e-15
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 75 4e-14
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 74 6e-14
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 69 2e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 67 7e-12
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 58 4e-09
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 57 8e-09
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 43 1e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.021
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 34 0.063
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.14
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 33 0.19
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 33 0.19
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 31 0.44
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 29 2.4
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 28 4.1
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 28 4.1
At5g40450.1 68418.m04905 expressed protein 28 5.4
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 27 7.2
At3g50090.1 68416.m05476 exonuclease family protein contains exo... 27 9.5
At2g46640.1 68415.m05818 hypothetical protein and genefinder; e... 27 9.5
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 129 bits (312), Expect = 1e-30
Identities = 62/87 (71%), Positives = 74/87 (85%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
++ LEVEHPAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSIISGY
Sbjct: 65 LRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGY 124
Query: 427 RLACKEAVKYIQDNLTVTVESLGRPSL 507
RLA +E+ KYI++ L VE LG+ L
Sbjct: 125 RLAMRESCKYIEEKLVTKVEKLGKVPL 151
Score = 89.0 bits (211), Expect = 2e-18
Identities = 44/66 (66%), Positives = 49/66 (74%)
Frame = +2
Query: 56 MSTIAAPLSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTND 235
MS A ++G R G VRTQNVM NIVK+SLGPVGLDKMLVDDIGDVT+TND
Sbjct: 1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Query: 236 GATILK 253
GATIL+
Sbjct: 61 GATILR 66
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 524 NLSSKLIGADADFFSEMVVDAAQAI 598
++SSKLI D+DFF+ +VV+A ++
Sbjct: 158 SMSSKLISGDSDFFANLVVEAVLSV 182
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 90.2 bits (214), Expect = 9e-19
Identities = 38/63 (60%), Positives = 57/63 (90%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K L +++PAAKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GY
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 427 RLA 435
R+A
Sbjct: 126 RMA 128
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +2
Query: 104 GDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGD--VTVTNDGATILKS 256
G+ R + + ++VKS+LGP G+DK+L VTVTNDGATILKS
Sbjct: 16 GERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKS 68
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 79.8 bits (188), Expect = 1e-15
Identities = 35/82 (42%), Positives = 56/82 (68%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+ +LE++HPAAK+LV A+ Q EE+GDG + A ELL+NA+EL++ +HP+ IISGY
Sbjct: 73 VNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGY 132
Query: 427 RLACKEAVKYIQDNLTVTVESL 492
A +AV+ ++ + E++
Sbjct: 133 TKAVSKAVEILEQLVETGSETM 154
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 107 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 250
D +N+ I ++SLGP G++KM+++ + + VTND ATI+
Sbjct: 26 DEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 73
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 78.2 bits (184), Expect = 4e-15
Identities = 36/80 (45%), Positives = 57/80 (71%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K L++ HPAAK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I Y
Sbjct: 69 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSY 128
Query: 427 RLACKEAVKYIQDNLTVTVE 486
R A A+ +++ L V++E
Sbjct: 129 RTASTLAIAKVKE-LAVSIE 147
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +2
Query: 98 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
S G N+ ++V+++LGP G+DK++ DD G VT++NDGATI+K
Sbjct: 19 SQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMK 70
Score = 35.9 bits (79), Expect = 0.021
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 497 GRL*QHSPNNLSSKLIGADADFFSEMVVDAAQAI 598
G L + + LSSKLIG + +FF+ MVVDA AI
Sbjct: 156 GLLAKCAATTLSSKLIGGEKEFFATMVVDAVMAI 189
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 74.9 bits (176), Expect = 4e-14
Identities = 32/80 (40%), Positives = 57/80 (71%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+++L+V HPAAK ++EL++ QDEEVGDGTTSV+++A E+L A+ ++ HPT I Y
Sbjct: 65 LRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAY 124
Query: 427 RLACKEAVKYIQDNLTVTVE 486
A ++++ + D + ++++
Sbjct: 125 IKALEDSIA-VLDKIAMSID 143
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +2
Query: 77 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
LS + R G V N+ +I++++LGP + KML+D G + VTNDG IL+
Sbjct: 8 LSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILR 66
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 74.1 bits (174), Expect = 6e-14
Identities = 41/87 (47%), Positives = 52/87 (59%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+ K+EV PAAK+LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I
Sbjct: 74 LNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSL 133
Query: 427 RLACKEAVKYIQDNLTVTVESLGRPSL 507
AC +A+ I + V VE R SL
Sbjct: 134 HKACGKAID-ILTAMAVPVELTDRDSL 159
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +2
Query: 107 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKSWKWSILLP 280
+ +R N+ + V++SLGP G+DKM+ G+V +TNDGATIL K +L P
Sbjct: 27 EDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILN--KMEVLQP 82
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 68.9 bits (161), Expect = 2e-12
Identities = 29/72 (40%), Positives = 52/72 (72%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+++++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY
Sbjct: 74 LEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGY 133
Query: 427 RLACKEAVKYIQ 462
+A + AV++++
Sbjct: 134 EMASRVAVEHLE 145
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = +2
Query: 92 TRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
TR G + N+ I++SSLGP G+DKML GD+T+TNDGATIL+
Sbjct: 22 TRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILE 75
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 67.3 bits (157), Expect = 7e-12
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = +1
Query: 256 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 435
++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 436 CKEAVKYIQ 462
+ AV++++
Sbjct: 61 SRVAVEHLE 69
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 58.0 bits (134), Expect = 4e-09
Identities = 24/79 (30%), Positives = 48/79 (60%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K++++++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 427 RLACKEAVKYIQDNLTVTV 483
+A + ++++ DN V
Sbjct: 123 EIAKRATLQFL-DNFKTPV 140
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 152 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
+++KS+LGP G KMLV GD+ +T DG T+LK
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/79 (29%), Positives = 47/79 (59%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K++++++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 427 RLACKEAVKYIQDNLTVTV 483
+A + ++++ T V
Sbjct: 123 EIAKRATLQFLDTFKTPVV 141
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 152 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
+++KS+LGP G KMLV GD+ +T DG T+LK
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +1
Query: 262 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 441
+E+ A ++ E+A +E GDGTT+ +I+A E++K + + S+ +G K
Sbjct: 97 IENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVK 156
Query: 442 EAVKYIQ 462
E V+ +Q
Sbjct: 157 ELVRVLQ 163
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 35.9 bits (79), Expect = 0.021
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +1
Query: 262 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 441
+E+ A ++ E+A ++ GDGTT+ I+A E++K+ V + +P S+ G +
Sbjct: 110 MENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQ 169
Query: 442 EAVKYIQ 462
++ +Q
Sbjct: 170 GLIEELQ 176
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 34.3 bits (75), Expect = 0.063
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 262 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 441
VE+ AK++ + A ++ GDGTT+ V++A L+ ++V +P I G K
Sbjct: 117 VENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTK 176
Query: 442 EAV 450
V
Sbjct: 177 ALV 179
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 262 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 441
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 117 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 176
Query: 442 EAVKYIQ 462
V ++
Sbjct: 177 ALVNELK 183
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 262 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 441
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 442 EAV 450
V
Sbjct: 181 ALV 183
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 262 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 441
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 442 EAV 450
V
Sbjct: 181 ALV 183
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 247 IKKLEVEHPAAKVLVELAQLQ----DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 414
+K++E+E P V V+L + ++ GDG+T+ +I+A L+ +++ +P +
Sbjct: 96 LKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQV 155
Query: 415 ISGYRLACKEAV 450
G K V
Sbjct: 156 ARGIEKTTKALV 167
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 167 SLGPVGLDKMLVDDIGDVTVTNDGATILK 253
+LGP G + +L + G + NDG T+LK
Sbjct: 69 TLGPKGRNVVLQNKYGPPRIVNDGETVLK 97
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 158 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
VK ++GP G + ++ G +T DG T+ KS
Sbjct: 57 VKVTMGPKGRNVIIESSYGGPKITKDGVTVAKS 89
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 158 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
VK ++GP G + ++ G VT DG T+ KS
Sbjct: 57 VKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKS 89
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 158 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
VK ++GP G + ++ G VT DG T+ KS
Sbjct: 58 VKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKS 90
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/70 (20%), Positives = 32/70 (45%)
Frame = +1
Query: 253 KLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRL 432
K +++ A ++ ++A ++ GDGTT ++ + + V ++ + G +L
Sbjct: 94 KDRIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKL 153
Query: 433 ACKEAVKYIQ 462
A V +Q
Sbjct: 154 AVDTVVTNLQ 163
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +1
Query: 307 QDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVE 486
+D E D TS I K+ +VKT I+SG K ++ ++ LT
Sbjct: 2842 EDHEHKDDKTSPDSIVMVEAKDTVSIVKTHKKSHGILSGVGSKVKHSISKVKKVLT---- 2897
Query: 487 SLGRPSLTTQPKQP 528
G+ S TT+P P
Sbjct: 2898 --GKSSHTTKPSSP 2909
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -3
Query: 575 PSPRRNLHQLQLV*MTGCLGCVVRDGLPSDSTVTVRLS*MYLTASLQARRYPEI 414
PS NLH+LQ + + GC V LP++ + L + LT L +R+PEI
Sbjct: 720 PSSIGNLHKLQKLTLNGCSKLEV---LPANINLE-SLDELDLTDCLVLKRFPEI 769
>At3g50090.1 68416.m05476 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 322
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 58 VDYSCTFVCSRDKILRRPSENTKCNGSSGY 147
+D S F + LRRPS NT C GY
Sbjct: 162 IDTSLVFKYPNSRKLRRPSLNTLCMSVLGY 191
>At2g46640.1 68415.m05818 hypothetical protein and genefinder;
expression supported by MPSS
Length = 310
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 301 QLQDEEVGDGTTSVVIIAAELLKNADE 381
++ D+E G G V+I ++KN D+
Sbjct: 65 EMDDDECGSGDLDYVVIDGSIIKNVDQ 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,357
Number of Sequences: 28952
Number of extensions: 240928
Number of successful extensions: 610
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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