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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30974.Seq
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   9e-26
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        31   0.79 
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_7019| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   27   9.7  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.7  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  113 bits (272), Expect = 9e-26
 Identities = 53/63 (84%), Positives = 58/63 (92%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKGIKDILVQYDRSLLVADPRRCEPKKFGGPXARARYQK 436
           IRQAISK+L+A+YQKYVDE SKK I+DILVQYDRSLLVADPRR E KKFGGP AR+RYQK
Sbjct: 45  IRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQK 104

Query: 437 SYR 445
           SYR
Sbjct: 105 SYR 107



 Score = 54.8 bits (126), Expect(2) = 2e-08
 Identities = 23/33 (69%), Positives = 29/33 (87%)
 Frame = +3

Query: 156 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVY 254
           K++EPILLLGKE+F  VDIRV VKGGGH +++Y
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIY 43



 Score = 20.6 bits (41), Expect(2) = 2e-08
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 30 QAVQVFGRK 56
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 233 WSCSTSLPIRQAIS-KALIAFYQKYVDEASKKGIKDILVQYDRSLLVADPRRCE 391
           W  +  L ++       ++AF QKY+D   +K      +Q+ + +LV+  R CE
Sbjct: 36  WDRALELAVKHKTHVDTVLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 200 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 114
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 92  SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 205
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_7019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 360 LLSYCTRMSLIPFFEASSTYFW 295
           L+S C R+S  PF  ASS + W
Sbjct: 276 LVSTCRRLSSTPFASASSNHSW 297


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 311 EASKKGIKDILVQYDRSLLVADPRRC 388
           E  KKG KD+ + Y+  + +A  R+C
Sbjct: 506 EIEKKGEKDLRISYEERMTMAKIRKC 531


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 443 GKISGIWHGHXDHRTSWARSDAGQP 369
           G+++G W    ++R  W + D G+P
Sbjct: 864 GRMAGCWAARHNNRKQWLQVDLGKP 888


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,780
Number of Sequences: 59808
Number of extensions: 368523
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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