Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30973.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    26   0.21 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   6.0  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.9  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 207 FITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRD 58
           FI   ++  K  I   +K ++ L   + K + DLS +   T TIE +  D
Sbjct: 68  FIKMVKQKHKKDIRADKKALQKLRREVEKAKRDLSSVHKTTLTIENLLAD 117


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 109 VSLSFKKCCFQKLNTLFFVFYSQFKVPLL 195
           + L F  C F  L T+++++YS  +  ++
Sbjct: 141 LQLVFVFCYFIYLFTVYYIYYSVHEASII 169


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 233 YQVIKSLKKYVLIFININFTTL 298
           +++  SL   +L+FI INF  L
Sbjct: 207 FKIDNSLILDLLVFITINFVVL 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,493
Number of Sequences: 336
Number of extensions: 2215
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)