Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30973.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   1.6  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   2.7  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   3.6  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   6.3  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   8.4  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.4  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   8.4  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 180  KLAIEDKEKRIKFLEAALLKT-QTDLSKLQSRTATIEKIS 64
            KLA ++KEK +K+L+++   + +  L+KL     T E++S
Sbjct: 1075 KLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKETNERLS 1114


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 165 DKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNENVLD 4
           D E  +K     L K   DL K+Q    ++EK+    +  I+EI    N N ++
Sbjct: 328 DLESLLKSRRELLEKLTGDLGKIQGEIESLEKLKVKKSTMINEIVHRYNINEIN 381


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/68 (22%), Positives = 40/68 (58%)
 Frame = -2

Query: 204 ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPES 25
           + + +  ++  +++KE+ ++  +AA+ ++   LSKLQ     I++    ++ +I E+ +S
Sbjct: 615 LKSTENRYRQLLQEKEEELEIQKAAVDESLLQLSKLQLDRNDIDQA---MDTQIDELLKS 671

Query: 24  RNENVLDL 1
           + E + D+
Sbjct: 672 QLEKLDDI 679


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/32 (31%), Positives = 23/32 (71%)
 Frame = +1

Query: 340 VIMYQSISVNNNMIYQVVVALNK*FFCIYLFT 435
           +I+Y S+S++NN +   +++L +  F +++FT
Sbjct: 8   LILYISLSIDNNYLVTTLISLKENVF-LHIFT 38


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 123 KTQT-DLSKLQSRTATIEKISRDLNIEIHEIPESRNENVLD 4
           KTQ  DL + Q+++    K   +L  EI+ +PE  +ENV++
Sbjct: 435 KTQIEDLEEDQNKSKIASKDGTNLK-EINSVPEFSDENVIN 474


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 219  STTDFITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIH 40
            S  +++     D KLA++D+ K    L   +       +KLQ +   I+ + R+ +I I 
Sbjct: 921  SKIEYLEKTIEDLKLALQDELKNRNLLMDDISSYNKQTTKLQEK---IKWLERERSILID 977

Query: 39   EIPESRN 19
            E+   R+
Sbjct: 978  ELESYRS 984


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 134 ASRNLIRFSLSSIANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFININFTT 295
           ++R+ + +  +++ NL S    V      KGLS  ++  L + + +   I FTT
Sbjct: 168 SARDRVLWRWANVENLDSFLQQVYTYYTGKGLSCIIVHRLFQILTVSFVIGFTT 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,898
Number of Sequences: 5004
Number of extensions: 32850
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)