Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30973.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    29   2.1  
09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546...    29   3.7  
11_01_0599 - 4777964-4778842                                           28   6.5  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    27   8.6  

>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
            29646843-29646899,29647007-29647094,29647304-29647374,
            29647457-29647585,29647662-29648051,29648332-29648517,
            29648612-29648692,29648787-29648879,29648966-29649086,
            29649200-29649409,29649560-29649727,29649898-29650065,
            29650144-29650311,29650453-29650620,29650738-29650905,
            29651023-29651190,29651567-29651734,29652391-29652558,
            29652645-29652812,29655720-29655887,29656069-29656236,
            29656391-29656558,29656670-29656837,29657525-29657664,
            29658033-29658221,29658243-29658315,29658379-29658452,
            29658535-29658654,29658718-29658738,29658794-29658999,
            29659094-29659271,29660066-29660126,29660232-29660341,
            29660427-29660558,29661091-29661258,29661339-29661465,
            29661794-29661831,29663321-29663422,29663505-29663562,
            29663659-29663760,29663844-29663990,29664098-29664234,
            29664313-29664462,29664561-29664720,29665820-29665878,
            29666025-29666181,29666288-29666433,29666523-29666666,
            29667242-29667376
          Length = 2344

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 198  AEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEK 70
            A    F   +ED EK+I  L+  + + +  ++KLQS + TIEK
Sbjct: 1076 ARNEAFASKLEDAEKQIDLLQETVQRFEEAITKLQS-SVTIEK 1117


>09_04_0637 -
           19153136-19153513,19153607-19153759,19153857-19154675,
           19155068-19155174,19155434-19155548
          Length = 523

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 567 ELKYDCDS*FSPDILVLV-CLIHGRCLMHPT*EQGDVQKMSKLQL 436
           +  + C S FS  I   + CL  G C  HPT E G ++ + +L L
Sbjct: 185 QFNFPC-SLFSDKIAYSIRCLELGNCAFHPTIELGPLRNLKRLHL 228


>11_01_0599 - 4777964-4778842
          Length = 292

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -2

Query: 156 KRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIH 40
           + +K LEA + +T+ ++++L+ R + +E     LN ++H
Sbjct: 130 RSVKKLEAEVAETRQEVAQLKKRGSEMEMAVASLNAQLH 168


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 123 KTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNENVL 7
           K Q  L+ + S  + + K+ +DLN   +++   RNE +L
Sbjct: 139 KAQELLTNIASLESAVSKLEKDLNELYYQLCHERNERLL 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,222,361
Number of Sequences: 37544
Number of extensions: 166830
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)