Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30973.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   31   0.71 
SB_1543| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         30   1.6  
SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)                29   2.2  
SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)                   29   3.8  
SB_27985| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)                 28   6.6  
SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)                       27   8.7  
SB_47588| Best HMM Match : STAT_alpha (HMM E-Value=0.14)               27   8.7  
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)              27   8.7  

>SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = -2

Query: 174 AIEDKEKRIKFLEAALLKTQTDLSK-LQSRTATIEKISRDLNIEIHEIPESRNE 16
           A++DK K ++    ++ K + DLSK  +++++T E  SR+  +E++ I + + +
Sbjct: 277 AMDDKMKSLRLELESVSKQKNDLSKQFETQSSTFENTSRETQVELNLIRKEKEQ 330


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +2

Query: 170 IANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFININFTTLNVFYL*NEYDKL 334
           + NL +LC  + K+  +K  ++ ++      +L+ +++   TLN F+  +EYD L
Sbjct: 558 VLNLLALCVFLTKTFCIKKSNFLLLNLTVTDLLVGLSLGAKTLNEFFKPSEYDLL 612


>SB_1543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 454 FLYITLFLSRVHKAATMNKTNEN*DIRAEL 543
           FLY+    S +HKAA M  T +N + R EL
Sbjct: 37  FLYVQFISSDIHKAAIMKDTCKNFERRTEL 66


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -2

Query: 195 EQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 16
           E    K  I+D E  +++L+  L     D++K ++R   +EK   +L  E+ ++   RNE
Sbjct: 538 ESESMKGKIKDLEDEVRYLKERL----EDMAKEKTRRRELEKKIEELQDELDDVSTRRNE 593


>SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)
          Length = 324

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -2

Query: 192 QRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESR 22
           Q+D +   E+   ++K LE+A+ + ++DLS   +R    E I      E+    E +
Sbjct: 245 QKDLETLREESSNKVKELESAISQLRSDLSTANTRLKEKEDIISSTRTELGSTREEK 301


>SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)
          Length = 412

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 168 EDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNEN 13
           ED  +  + LE    +  TD  +L +R   +E  SR  N+ IH +PE   +N
Sbjct: 111 EDVAEITERLETVATRETTD--QLLTRVEGLENRSRRNNVIIHNVPEEAEKN 160


>SB_27985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -2

Query: 168 EDKEKRIKFLEAALLK-TQT---DLSKLQSRTATIEKISRDLNIEIHEIPESR 22
           ED+  +++  + A  + TQT   D+S +QS    +EK S +   EIH  P S+
Sbjct: 175 EDRTPQVRGRKRARTRITQTNDSDVSDIQSNNTPLEKDSSNAQDEIHHTPPSQ 227


>SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
          Length = 320

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 209 SVVLKGLSYQVIKSLKKYVLIFININFTTLNVFYL 313
           SVVL  L+  V+   ++Y+L+FI    T L + Y+
Sbjct: 162 SVVLSYLATFVMNKDQRYLLVFIQFGLTCLIIIYI 196


>SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = -2

Query: 219 STTDFITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIH 40
           S  + IT ++ +FK+A    + +++ + + +   +  L+  +SR   +E  SR  N+   
Sbjct: 83  SQEEIITIKE-EFKMA----DTKLEEMSSQVSLLEEKLAAERSRGVKLESFSRRNNLRFF 137

Query: 39  EIPESRNEN 13
            IPE  NE+
Sbjct: 138 GIPEGTNES 146


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = -2

Query: 174  AIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRN 19
            A+E+  ++I  L+A + +    L K+++     E+  ++LN  + E+ + +N
Sbjct: 1271 AVEESNEKITSLKALINQKDDALEKIKASLKEAEERFQELNRTLEEVQKEKN 1322


>SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 1736

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 156  KRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRN 19
            ++I+ LE    + Q +L K Q R   +EK+ R L+   HE+ E RN
Sbjct: 1589 EKIEPLENEQAQLQRNLDKSQQR---LEKLGRALDKVDHEVAEMRN 1631


>SB_47588| Best HMM Match : STAT_alpha (HMM E-Value=0.14)
          Length = 232

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 156 KRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRN 19
           ++I+ LE    + Q +L K Q R   +EK+ R L+   HE+ E RN
Sbjct: 30  EKIEPLENEQAQLQRNLDKSQQR---LEKLGRALDKVDHEVAEMRN 72


>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
          Length = 713

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 162 KEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRN 19
           +EK IKF +  L    ++ S L +   T +    D+N ++  +P   N
Sbjct: 21  REKHIKFFKRCLAVLPSEYSSLDTSRITAKVCRYDMNSQLAILPSGTN 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,228
Number of Sequences: 59808
Number of extensions: 218125
Number of successful extensions: 477
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)