Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30973.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    32   0.36 
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    32   0.36 
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    32   0.36 
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    29   1.9  
AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    28   4.4  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    28   4.4  
U64848-1|AAB04881.2|  481|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    28   5.8  
Z92831-4|CAJ58497.1|  447|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -2

Query: 204  ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 67
            + +E RD+K  + D   R+  L+  L    T+ ++++ R  ++EK+
Sbjct: 1924 VRSEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDRFLSVEKV 1969


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -2

Query: 204  ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 67
            + +E RD+K  + D   R+  L+  L    T+ ++++ R  ++EK+
Sbjct: 1997 VRSEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDRFLSVEKV 2042


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -2

Query: 204  ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 67
            + +E RD+K  + D   R+  L+  L    T+ ++++ R  ++EK+
Sbjct: 1997 VRSEVRDYKQRVHDVNNRVSELQRQLQDANTEKNRVEDRFLSVEKV 2042


>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
           protein C38D9.3 protein.
          Length = 1496

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = -2

Query: 210 DFITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIP 31
           D    E+R   +   ++E + K LEAA   +Q ++ KLQ      E ++++ + +++   
Sbjct: 251 DLFETEKRS--IIQSEREDQEKNLEAAKKASQREVEKLQQEKMAAENLAQESSEKLNVAK 308

Query: 30  ESRNEN 13
           E+ NE+
Sbjct: 309 ETTNES 314


>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -2

Query: 195 EQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 16
           EQ + KL   D EK++K  +  L+K +  + +LQSR     K   ++  E  ++ E +N 
Sbjct: 267 EQDENKLRA-DLEKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNT 325

Query: 15  NVLDL 1
           +  +L
Sbjct: 326 HDFEL 330


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -2

Query: 195 EQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 16
           EQ + KL   D EK++K  +  L+K +  + +LQSR     K   ++  E  ++ E +N 
Sbjct: 267 EQDENKLRA-DLEKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNT 325

Query: 15  NVLDL 1
           +  +L
Sbjct: 326 HDFEL 330


>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 164 SSIANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFI 277
           SSI+   S  + VM  +++KGL+ QV+  L  YV I I
Sbjct: 218 SSISTASSKSTRVMSELLVKGLNLQVLLPLICYVPISI 255


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 164 SSIANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFI 277
           SSI+   S  + VM  +++KGL+ QV+  L  YV I I
Sbjct: 218 SSISTASSKSTRVMSELLVKGLNLQVLLPLICYVPISI 255


>U64848-1|AAB04881.2|  481|Caenorhabditis elegans Hypothetical
           protein C50E3.5 protein.
          Length = 481

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/82 (23%), Positives = 42/82 (51%)
 Frame = +2

Query: 68  IFSIVAVRLCSLERSV*VLRSAASRNLIRFSLSSIANLKSLCSAVMKSVVLKGLSYQVIK 247
           I S +++ + SL++S  +  S +  ++  F+  S    + L +  + SVV+   S+   K
Sbjct: 100 IKSALSILMRSLQKSSSMTTSLSDIDVTLFNFHSTKFAERLLNRNVSSVVIVESSHVFSK 159

Query: 248 SLKKYVLIFININFTTLNVFYL 313
           + KK+   F N++    +++ L
Sbjct: 160 NAKKFASEFSNVSAYRADIYTL 181


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/53 (20%), Positives = 30/53 (56%)
 Frame = -2

Query: 171 IEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNEN 13
           I D E +++  +     T    ++L++  ATI++++ ++ +++ E+    +EN
Sbjct: 518 ISDLENQLEAAKLESGSTSEPNAQLEASQATIQELTSEMKMQLEEVKRQSDEN 570


>Z92831-4|CAJ58497.1|  447|Caenorhabditis elegans Hypothetical
           protein F22G12.7 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 129 LLKTQTDLSKLQSRTATIEKISRDLNIEI-HEIPESRN 19
           L +   D+SKLQ      +KI++++ +EI  EI ++RN
Sbjct: 194 LAEASEDISKLQGINCIEDKINKNVAVEIFSEIADARN 231


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 123  KTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNEN 13
            K  TDL  +Q+    +EKI + L ++I E  + + +N
Sbjct: 1391 KLMTDLVTVQAEKLELEKIIQKLEVDIAEKEQEKTDN 1427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,637,478
Number of Sequences: 27780
Number of extensions: 176634
Number of successful extensions: 441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)