Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30973.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   9.2  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   9.2  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   9.2  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   9.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 78  IEKISRDLNIEIHEIPES 25
           I+K ++D+N+EI   P+S
Sbjct: 461 IDKETKDMNLEISTRPKS 478


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 91  SHSYNRKNFKRFKY*N 44
           +++YN  N+K+ +Y N
Sbjct: 99  NNNYNNNNYKKLQYYN 114


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 91  SHSYNRKNFKRFKY*N 44
           +++YN  N+K+ +Y N
Sbjct: 99  NNNYNNNNYKKLQYYN 114


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 91  SHSYNRKNFKRFKY*N 44
           +++YN  N+K+ +Y N
Sbjct: 99  NNNYNNNNYKKLQYYN 114


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 91  SHSYNRKNFKRFKY*N 44
           +++YN  N+K+ +Y N
Sbjct: 99  NNNYNNNNYKKLQYYN 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,662
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)