Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30973.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot...    31   0.58 
At1g58070.1 68414.m06581 expressed protein                             29   2.4  
At3g15600.1 68416.m01976 hypothetical protein low similarity to ...    29   3.1  
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont...    28   4.1  
At2g22560.1 68415.m02674 kinase interacting protein-related simi...    28   4.1  
At3g47400.1 68416.m05154 pectinesterase family protein similar t...    27   7.2  
At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S...    27   7.2  
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    27   7.2  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    27   9.5  
At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protei...    27   9.5  
At2g45900.1 68415.m05708 expressed protein                             27   9.5  
At1g44080.1 68414.m05088 F-box protein-related / C-type lectin-r...    27   9.5  
At1g03990.1 68414.m00385 alcohol oxidase-related low similarity ...    27   9.5  

>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
           contains Pfam profile PF00439: Bromodomain
          Length = 475

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -2

Query: 168 EDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRD 58
           E K+KR+  L+AALLK++  +  L+S+  +++  S D
Sbjct: 75  ELKKKRVAELKAALLKSEDSIGSLESKLQSLKSESND 111


>At1g58070.1 68414.m06581 expressed protein
          Length = 284

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 150 IKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHE 37
           +K LEA + +T+T++  L+ R +  E     LN E+H+
Sbjct: 133 LKKLEAEITETKTEVKMLKERESETEVALATLNAELHK 170


>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 591

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 189 RDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 16
           +DF    E+++KR+K LEAA+   Q   S +++  A   K   D   E+ E  ++  E
Sbjct: 356 KDFSKKYEEQDKRLKLLEAAIKSIQ---SGIRTEDACGSKEIDDKENELEEGSDAETE 410


>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 736

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 177 LAIEDKEKRIKF----LEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESR 22
           +++EDK  R++     LE  L K QT++   + +  ++EK  +DL   I  + E +
Sbjct: 458 ISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEK 513


>At2g22560.1 68415.m02674 kinase interacting protein-related similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]; weak similarity to Myosin II heavy chain,
           non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
          Length = 891

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 177 LAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPE 28
           +AIED+E R    E A+   Q  L +LQ +     + +R+ +++I E  E
Sbjct: 180 VAIEDEEARRLMTETAIKSCQEKLVELQEKQEKSYEEAREEHVKIKESKE 229


>At3g47400.1 68416.m05154 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Vitis vinifera
           GI:15081598, Lycopersicon esculentum SP|Q43143
           SP|P14280; contains Pfam profile PF01095 pectinesterase
          Length = 594

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 117 QTDLSKLQSRTATIEKISRDLNIEIHEIPESRNENVLDL 1
           QT LS  Q+   T    S DLN+    +P   N+N+ DL
Sbjct: 192 QTWLSTAQTNIETCRSGSEDLNVSDFVMPVISNKNLSDL 230


>At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature
          Length = 348

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 418 CIYLFTQL*FGHFLYITLFLSRVH 489
           CI+  + + FG F+YI L ++R H
Sbjct: 325 CIFFISSILFGLFVYIFLLINRKH 348


>At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|O23627 Glycyl-tRNA
           synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
           {Arabidopsis thaliana}; contains Pfam profile PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T)
          Length = 276

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 161 KKSVLSFWKQHFL 123
           K +VLSFW+QHF+
Sbjct: 33  KSNVLSFWRQHFI 45


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 161 KKSVLSFWKQHFL 123
           K +VLSFW+QHF+
Sbjct: 154 KSNVLSFWRQHFI 166


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 204 ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIE 73
           +TA+    K  + +KE ++  L     K+Q  + +L++  AT+E
Sbjct: 715 LTADSSKLKEQLAEKESKLFLLTEKDSKSQVQIKELEATVATLE 758


>At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protein
           identical to SP|O04378 Syntaxin 23 (AtSYP23) (AtPLP)
           (AtPEP12-like protein) {Arabidopsis thaliana}
          Length = 255

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = -2

Query: 204 ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHE 37
           +  E +  +L + D E  I F EA + + +  + ++Q +   + +I +DL + +H+
Sbjct: 164 LLVESKRQELVLLDNE--IAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHD 217


>At2g45900.1 68415.m05708 expressed protein
          Length = 720

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -2

Query: 195 EQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKI 67
           +  D K  ++DKE  +++++A +  ++ +  +L +R+   EKI
Sbjct: 542 KDNDVKTRMDDKELALEYIQAVVKSSELNWEELLARSFYSEKI 584


>At1g44080.1 68414.m05088 F-box protein-related / C-type
           lectin-related contains F-box domain Pfam:PF00646,
           PF00059: Lectin C-type domain
          Length = 347

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 79  CSCATLQLGKVSLSFKKCCFQKLNTLFF 162
           CS  T Q+   S S  + CFQ  +T FF
Sbjct: 320 CSIITKQINSSSSSSHQSCFQMFSTSFF 347


>At1g03990.1 68414.m00385 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]; Location
           of EST 248L9T7, gb|AA713296
          Length = 758

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 155 FSLSSIANLKSLCSAVMKSVVLKGLSYQV-IKSLKKYVLI 271
           FS S +  L S+C A+M  V L+ L+ ++ +K L+   L+
Sbjct: 28  FSKSDLQALSSICDAIMPPVPLESLNLEMKLKVLRNDALL 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,720,692
Number of Sequences: 28952
Number of extensions: 154334
Number of successful extensions: 443
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)