Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30972.Seq
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   4.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.0  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.9  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 156 FNLSAIITSRAVPRKKSPGGKTAVVLSDS 242
           F++S+I+   A+   KSP       LSDS
Sbjct: 23  FSISSILPETALEAPKSPENHPETELSDS 51


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 375 PSPPADTFLPAL 340
           PSPPA + LPAL
Sbjct: 72  PSPPAPSELPAL 83


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 567 AMAADCAPPEATLRRRRDGA 508
           ++ A  +PPE  LR RRD A
Sbjct: 203 SIGAKKSPPEKHLRLRRDTA 222


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 321 FLVLHW*EPAGMYRPVGWVLSWATHALR 404
           +L L   E + +++P GWVL+ A  A R
Sbjct: 314 YLNLFLEELSEIFKPRGWVLTIAVPASR 341


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 391 HTHCATCDNGRPQG 432
           H+ CAT  NG P G
Sbjct: 35  HSPCATGSNGLPAG 48


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 21  FNDHNIVITEL 53
           F DHNI ITE+
Sbjct: 93  FQDHNIEITEV 103


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 21  FNDHNIVITEL 53
           F DHNI ITE+
Sbjct: 326 FQDHNIEITEV 336


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 21  FNDHNIVITEL 53
           F DHNI ITE+
Sbjct: 326 FQDHNIEITEV 336


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 525 GEELPQGARSLQPSRPXRRA 584
           G E+PQ     QP +  RRA
Sbjct: 44  GGEIPQNIIQQQPQQARRRA 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,099
Number of Sequences: 336
Number of extensions: 3252
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)