Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30972.Seq
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 31 0.17
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.1
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 26 3.6
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 6.3
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 25 6.3
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 6.3
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 8.4
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 25 8.4
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 8.4
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.4
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 30.7 bits (66), Expect = 0.17
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -3
Query: 586 DARLXGRDGCRLRAP*GNSSPTEGWRELSSDADAG*FTGYTSHSSPHDGKYSPGGG 419
DARL RD L A G + P ++ D D+ TG+T H +YSP G
Sbjct: 112 DARLRRRD-IELDAAAGRTKPAAFLQDEDDDLDSNLGTGFTRHRHRIYDEYSPNVG 166
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 471 GIPVIRPLMMESTALGAAIVAGRAMRVW 388
GIP+I P+ L A+ + RA ++W
Sbjct: 131 GIPIIDPVTRAPAVLAGAVSSSRAKQMW 158
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 375 PSPPADTFLPALTNXXXXXXXXXXXEALNKCMGWTDTKNELST 247
P PP+ T LPAL + E T+TK ELST
Sbjct: 61 PRPPSATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELST 103
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 276 WTDTKNELSTQKNQIELLQFCRRDFFSSEPPY 181
W +T+N + N +E+L R+ S P Y
Sbjct: 764 WANTENARYSTSNALEILDMLLREKIESAPRY 795
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -1
Query: 528 RRRRDGANSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPTTIPSPPADTFL 349
R++ + N+ + Q+D+ V+ L+ +TA G A +++W + + P D
Sbjct: 281 RKKTNNFNTHQILSQSDV----VLNALLSVATAFGFANPVDNVLKLWQHIVQAIPLDAPF 336
Query: 348 PAL 340
P L
Sbjct: 337 PLL 339
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 287 NAWDGPILKMNCQRRRIR*NYCSFAAGTFFPRNRPTSD 174
N W P L++NC + Y + G+F+ + R T D
Sbjct: 1434 NLWK-PHLQLNCLSDEVAQYYITLCKGSFYYQMRNTED 1470
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 349 QECIGRWAGYCRGPHTHCATC 411
QEC+ W G+ + THC C
Sbjct: 36 QECLVEWLGHSK--KTHCELC 54
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 471 PVNQPASASELSSRHPSVGEELPQGA 548
P +P++ S+L S+G+ LP GA
Sbjct: 584 PYVRPSAPSKLPDTRQSIGDPLPPGA 609
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 274 PSHAFIQGFFPTNSPHFSFF-IGKSRQECIGRWAGYCRGPHT 396
PS + Q F+P S S + +GK+ Q G + Y G T
Sbjct: 410 PSTVYHQVFYPPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 372 WVLSWATHALRDLRQWPPPGLYF 440
W L+ A D+R WPP ++F
Sbjct: 403 WTLTDLADAFLDVRLWPPIFMFF 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,366
Number of Sequences: 5004
Number of extensions: 49609
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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