Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30972.Seq
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922...    57   9e-09
10_08_0050 + 14469879-14470072,14470620-14471094                       29   2.1  
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19...    29   2.8  
04_04_1220 + 31843628-31844755                                         29   3.7  
08_01_0844 - 8283858-8284409,8284883-8284963                           28   4.9  
12_02_0625 - 21331209-21331273,21331364-21331555,21332348-213325...    28   6.5  
04_04_1359 - 32886181-32886789                                         28   6.5  
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794...    27   8.6  

>04_04_1370 -
           32990002-32990244,32990950-32991943,32992019-32992240,
           32993413-32993543
          Length = 529

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 31/61 (50%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
 Frame = -1

Query: 561 AADCAPPEATLRRRRDGA---NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRV 391
           A +    E     R DG    N++LMQ+QADLLG PV+RP  +E+TALGAA  AG A+ V
Sbjct: 421 AGEVKSAEGEFLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGV 480

Query: 390 W 388
           W
Sbjct: 481 W 481


>10_08_0050 + 14469879-14470072,14470620-14471094
          Length = 222

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 279 GWTDTKNELSTQKNQIELLQFCRRD 205
           G+T T ++ S   N  E+L+FCRR+
Sbjct: 101 GFTSTSSDRSNSGNSSEMLRFCRRE 125


>05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-190404,
            190584-190862,190941-191013,191331-191379,192169-192433,
            192576-192631,192777-192845,193028-193139,193682-193771,
            193955-194125,194449-194506,194970-195128,195379-195401
          Length = 985

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 351  GMYRPVGWVLSWATHALRDLRQWPPPGL 434
            G   PVGW L + T  L D    PPP L
Sbjct: 926  GNNNPVGWPLRFLTPVLSDENSVPPPSL 953


>04_04_1220 + 31843628-31844755
          Length = 375

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 427 GGGHCRRSRNACVAHDNTQPT 365
           GGGH R  R +CV  D+ +P+
Sbjct: 231 GGGHMRERRTSCVVVDDMEPS 251


>08_01_0844 - 8283858-8284409,8284883-8284963
          Length = 210

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 594 CHKTRALXDAMAADCAPPEATLRRRRDG 511
           C  +R+   A AA C PP+   RR R G
Sbjct: 164 CGSSRSRDGASAAGCLPPDVGKRRHRGG 191


>12_02_0625 -
           21331209-21331273,21331364-21331555,21332348-21332558,
           21333600-21333700,21333839-21333844,21333956-21334051,
           21334485-21334497
          Length = 227

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 489 MQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPTTIPSPPAD 358
           +QADLLG PVIRP           + AG  ++        PP D
Sbjct: 41  LQADLLGSPVIRPSEPLELQKQLELAAGIWIKAVDPAFGLPPVD 84


>04_04_1359 - 32886181-32886789
          Length = 202

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 423 PPGLYFPS*GDE*LVYPVNQPASASELSSRHPSVGEELPQGARSLQPSRPXRRASC 590
           P  LY+       +  PV+    A  ++S   S    LP  + SL PS P   +SC
Sbjct: 89  PQPLYYSHHHHRLMHSPVSPMDYAYVMASSSSSSSSSLPSSSSSLSPSPPASSSSC 144


>01_06_0854 -
           32477994-32478161,32478689-32478826,32479225-32479440,
           32479580-32479656,32481144-32481555,32482248-32482850,
           32482954-32483229
          Length = 629

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -3

Query: 496 DADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHDNTQPTG 362
           DAD G     T HS P  G+   G G  RR R        T P G
Sbjct: 387 DADGGGGADSTGHSPPRSGR-KRGAGQQRRQRRRSPRPRVTAPDG 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,581,479
Number of Sequences: 37544
Number of extensions: 379963
Number of successful extensions: 1094
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)