Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30972.Seq
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5) 54 1e-07
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51) 54 1e-07
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_17144| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 28 6.6
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 67.7 bits (158), Expect = 7e-12
Identities = 41/75 (54%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Frame = -1
Query: 597 VCHKTRALXDAMAADCAPPEATLRRRRDGA---NSVLMQMQADLLGIPVIRPLMMESTAL 427
VC +TR L DAM DC P A+L DG N +LMQ+QAD+LGI V RP M E+TAL
Sbjct: 401 VCFQTRELLDAMNEDCGIPLASLLV--DGGMTVNRLLMQLQADILGISVERPTMPETTAL 458
Query: 426 GAAIVAGRA--MRVW 388
GAA+ AG A + VW
Sbjct: 459 GAAMAAGAAKGIEVW 473
>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
Length = 85
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Frame = -1
Query: 564 MAADCAPPEATLRRRRDGA---NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRA-- 400
M DC P A+L DG N +LMQ+QAD+LGI V RP M E+TALGAA+ AG A
Sbjct: 1 MNEDCGIPLASLLV--DGGMTVNRLLMQLQADILGISVERPTMPETTALGAAMAAGAAKG 58
Query: 399 MRVW 388
+ VW
Sbjct: 59 IEVW 62
>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
Length = 137
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Frame = -1
Query: 564 MAADCAPPEATLRRRRDGA---NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRA-- 400
M DC P A+L DG N +LMQ+QAD+LGI V RP M E+TALGAA+ AG A
Sbjct: 1 MNEDCGIPLASLLV--DGGMTVNRLLMQLQADILGISVERPTMPETTALGAAMAAGAAKG 58
Query: 399 MRVW 388
+ VW
Sbjct: 59 IEVW 62
>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -1
Query: 522 RRDGA---NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 388
R DG N +M++ + L G + RP + + LGAA +AG A VW
Sbjct: 9 RTDGGVCNNDFVMELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +1
Query: 349 QECIGRW--AGYCRGPHTHCATC 411
QEC+GRW A + RG H C C
Sbjct: 26 QECLGRWNVAQFFRGRHPTCPHC 48
>SB_17144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 516 PSVGEELPQGARSLQPSRPXRRAS 587
PSVGEE P ++ +P RP +A+
Sbjct: 149 PSVGEERPYTSKKRRPGRPRHQAT 172
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -2
Query: 488 CRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCRLLPMKNEKCGEF 309
CR + +Q VP+ + Q WG + + +C +Q R H +LL + +CGE+
Sbjct: 290 CRQVAVYHQRGVPT-LEEQEWGVGVVEEYKCPTCSQQIRFPRYNHPAKLLETRCGRCGEW 348
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 371 LGIVVGHTRIARPATMAAPRAVLSIMRGRMTGI 469
+G+ + HTR+A + A VLSI R R+ G+
Sbjct: 1618 VGLSIHHTRLADVSIHHARLGVLSIHRSRLVGL 1650
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 337 GKSRQECIGRWAGYCRGPHTHCAT 408
G + Q C G AGYC P HC T
Sbjct: 751 GSAAQHC-GTNAGYCGIPSNHCGT 773
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 373 GYCRGPHTHCATCDNGRPQGCTFHHEG 453
G C+ C TC P+ CTF +G
Sbjct: 470 GICKSCDPGCTTCSTSDPKKCTFCAKG 496
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,597,064
Number of Sequences: 59808
Number of extensions: 413517
Number of successful extensions: 892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -