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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30972.Seq
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl...    56   1e-08
At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib...    36   0.016
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib...    36   0.016
At4g24900.1 68417.m03564 expressed protein                             29   3.1  
At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At3g50610.1 68416.m05534 hypothetical protein                          28   4.1  
At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ...    28   4.1  
At5g24480.1 68418.m02885 hypothetical protein similar to unknown...    28   5.4  
At4g39030.1 68417.m05528 enhanced disease susceptibility 5 (EDS5...    27   7.2  
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden...    27   7.2  

>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
           glycerol kinase (ATP:glycerol 3-phosphotransferase,
           Glycerokinase, GK)[Mycobacterium tuberculosis]
           Swiss-Prot:O69664
          Length = 522

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 25/41 (60%), Positives = 34/41 (82%)
 Frame = -1

Query: 510 ANSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 388
           AN++LMQ+QADL+G PV+RP+ +E+TALGAA  AG A+  W
Sbjct: 433 ANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFW 473


>At4g30310.3 68417.m04309 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 451

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -1

Query: 507 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPT 382
           N + +Q  AD++G P+I P   ES  LGAAI+   A + +P+
Sbjct: 357 NPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 398


>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 579

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -1

Query: 507 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPT 382
           N + +Q  AD++G P+I P   ES  LGAAI+   A + +P+
Sbjct: 485 NPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 526


>At4g24900.1 68417.m03564 expressed protein
          Length = 421

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 472 GYTSHSSPHDGK-YSPGGGHCRRSRNACVAHDNTQPTGRYIPAG 344
           G+  HS P   K YS  G +C +  N  V+ D  Q  G Y P G
Sbjct: 230 GFGEHSIPCRSKDYSGNGNYCTQE-NYQVSQDKKQIDGSYNPPG 272


>At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana]
           gi|4928403|gb|AAD33584.1|AF132016_1[4928403]; contains
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 368

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 484 G*FTGYTSH-SSPHDGKYSPGGGHCRRSRNACVAHDNTQPTGRYIPAGSY 338
           G FT Y  H +   DG  +P GG  RR  NA VA      T    P   Y
Sbjct: 60  GFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVY 109


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 526 PTEGWRELSSDADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHDN 377
           PTEG + L ++      TG T   +P    +SPG GH + + N   + D+
Sbjct: 61  PTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKKGNVNVESSEDD 110


>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 397

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -3

Query: 472 GYTSHSSPHDGKYSPGGGHCRRSRNACVAHDNTQPTGRYIPAGSYQ 335
           GY   S+  D  Y    GHC+        H   QPT   +P    Q
Sbjct: 127 GYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQ 172


>At5g24480.1 68418.m02885 hypothetical protein similar to unknown
           protein (gb|AAD32930.1)
          Length = 350

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -1

Query: 456 RPLMMESTALGAAIVAGRAMRVWPTTIPSP---PADTFL 349
           RP          ++ + R  R WP T+PSP    A TFL
Sbjct: 10  RPHFQSIHFFDCSLTSDRGQRSWPATLPSPQPLSASTFL 48


>At4g39030.1 68417.m05528 enhanced disease susceptibility 5 (EDS5) /
           salicylic acid induction deficient 1 (SID1) identical to
           SP|Q945F0; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 543

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 428 WGRPLSQVAQCVCGPRQYPAHRPIHSCRLL 339
           WG PLSQ AQ       Y A+R +   R L
Sbjct: 371 WGEPLSQTAQSFMPEMLYGANRNLPKARTL 400


>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
           identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01966:
           HD domain, PF04607: Region found in RelA / SpoT proteins
          Length = 712

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 441 PS*GDE*LVYPVNQPASASELSSRHPSVGEEL 536
           P+ G   L++      S+S  SS HPSVGEEL
Sbjct: 48  PTIGGLSLLFSGASVKSSSSSSSSHPSVGEEL 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,632,650
Number of Sequences: 28952
Number of extensions: 274204
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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