BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30972.Seq (597 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl... 56 1e-08 At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib... 36 0.016 At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib... 36 0.016 At4g24900.1 68417.m03564 expressed protein 29 3.1 At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) fa... 28 4.1 At3g50610.1 68416.m05534 hypothetical protein 28 4.1 At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ... 28 4.1 At5g24480.1 68418.m02885 hypothetical protein similar to unknown... 28 5.4 At4g39030.1 68417.m05528 enhanced disease susceptibility 5 (EDS5... 27 7.2 At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden... 27 7.2 >At1g80460.1 68414.m09423 glycerol kinase, putative similar to glycerol kinase (ATP:glycerol 3-phosphotransferase, Glycerokinase, GK)[Mycobacterium tuberculosis] Swiss-Prot:O69664 Length = 522 Score = 56.4 bits (130), Expect = 1e-08 Identities = 25/41 (60%), Positives = 34/41 (82%) Frame = -1 Query: 510 ANSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 388 AN++LMQ+QADL+G PV+RP+ +E+TALGAA AG A+ W Sbjct: 433 ANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFW 473 >At4g30310.3 68417.m04309 ribitol kinase, putative similar to ribitol kinase [Klebsiella pneumoniae] gi|2905643|gb|AAC26495 Length = 451 Score = 36.3 bits (80), Expect = 0.016 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = -1 Query: 507 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPT 382 N + +Q AD++G P+I P ES LGAAI+ A + +P+ Sbjct: 357 NPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 398 >At4g30310.2 68417.m04308 ribitol kinase, putative similar to ribitol kinase [Klebsiella pneumoniae] gi|2905643|gb|AAC26495 Length = 579 Score = 36.3 bits (80), Expect = 0.016 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = -1 Query: 507 NSVLMQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPT 382 N + +Q AD++G P+I P ES LGAAI+ A + +P+ Sbjct: 485 NPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 526 >At4g24900.1 68417.m03564 expressed protein Length = 421 Score = 28.7 bits (61), Expect = 3.1 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = -3 Query: 472 GYTSHSSPHDGK-YSPGGGHCRRSRNACVAHDNTQPTGRYIPAG 344 G+ HS P K YS G +C + N V+ D Q G Y P G Sbjct: 230 GFGEHSIPCRSKDYSGNGNYCTQE-NYQVSQDKKQIDGSYNPPG 272 >At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) family protein similar to RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana] gi|4928403|gb|AAD33584.1|AF132016_1[4928403]; contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 368 Score = 28.3 bits (60), Expect = 4.1 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Frame = -3 Query: 484 G*FTGYTSH-SSPHDGKYSPGGGHCRRSRNACVAHDNTQPTGRYIPAGSY 338 G FT Y H + DG +P GG RR NA VA T P Y Sbjct: 60 GFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVY 109 >At3g50610.1 68416.m05534 hypothetical protein Length = 229 Score = 28.3 bits (60), Expect = 4.1 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -3 Query: 526 PTEGWRELSSDADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHDN 377 PTEG + L ++ TG T +P +SPG GH + + N + D+ Sbjct: 61 PTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKKGNVNVESSEDD 110 >At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 397 Score = 28.3 bits (60), Expect = 4.1 Identities = 14/46 (30%), Positives = 17/46 (36%) Frame = -3 Query: 472 GYTSHSSPHDGKYSPGGGHCRRSRNACVAHDNTQPTGRYIPAGSYQ 335 GY S+ D Y GHC+ H QPT +P Q Sbjct: 127 GYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQ 172 >At5g24480.1 68418.m02885 hypothetical protein similar to unknown protein (gb|AAD32930.1) Length = 350 Score = 27.9 bits (59), Expect = 5.4 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Frame = -1 Query: 456 RPLMMESTALGAAIVAGRAMRVWPTTIPSP---PADTFL 349 RP ++ + R R WP T+PSP A TFL Sbjct: 10 RPHFQSIHFFDCSLTSDRGQRSWPATLPSPQPLSASTFL 48 >At4g39030.1 68417.m05528 enhanced disease susceptibility 5 (EDS5) / salicylic acid induction deficient 1 (SID1) identical to SP|Q945F0; contains Pfam profile PF01554: Uncharacterized membrane protein family Length = 543 Score = 27.5 bits (58), Expect = 7.2 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 428 WGRPLSQVAQCVCGPRQYPAHRPIHSCRLL 339 WG PLSQ AQ Y A+R + R L Sbjct: 371 WGEPLSQTAQSFMPEMLYGANRNLPKARTL 400 >At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) identical to RSH3 (RelA/SpoT homolog) GI:7141308 from [Arabidopsis thaliana]; contains Pfam profiles PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins Length = 712 Score = 27.5 bits (58), Expect = 7.2 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +3 Query: 441 PS*GDE*LVYPVNQPASASELSSRHPSVGEEL 536 P+ G L++ S+S SS HPSVGEEL Sbjct: 48 PTIGGLSLLFSGASVKSSSSSSSSHPSVGEEL 79 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,632,650 Number of Sequences: 28952 Number of extensions: 274204 Number of successful extensions: 639 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 639 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1190791976 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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