Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30971.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   4.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   7.9  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 297 LKTQTTATVKNKVTQDTR 350
           L+ +    +KNKVT DTR
Sbjct: 400 LEIEDWVLLKNKVTSDTR 417


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 453 IDVNTTNDVNRDLDSIKQYCPVCSSCHMMVFPSILWCLG 337
           ID+  T+ V+   +S     P       MVF  I+ CLG
Sbjct: 44  IDLYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCLG 82


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 453 IDVNTTNDVNRDLDSIKQYCPVCSSCHMMVFPSILWCLG 337
           ID+  T+ V+   +S     P       MVF  I+ CLG
Sbjct: 44  IDLYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCLG 82


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 520 GLVSAAANSINQYHEV 567
           G+VSAA N +  YH +
Sbjct: 13  GIVSAATNKVVCYHGI 28


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 464  ALAPAPFQLTTFAFCLWG 517
            A A  P   T +  CLWG
Sbjct: 1283 AFAAYPGDCTRYLHCLWG 1300


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 465 AYPAIDVNTT-NDVNRDLDSIKQ 400
           A+P+   N    D+NR++D IKQ
Sbjct: 281 AWPSRVANQKLRDLNREVDQIKQ 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,824
Number of Sequences: 336
Number of extensions: 3401
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)