Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30971.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    34   0.099
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201...    31   0.53 
06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977...    30   1.2  
05_06_0182 + 26179720-26179959,26180193-26180260,26180680-261807...    29   2.8  
06_01_0035 + 358669-359007,359458-359617,359723-360582                 28   6.5  

>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 496 LCILPVGTGLVSAAANSINQYHEVPFDGPMSRT 594
           LC    GT +V+A+AN++NQ  E+  D  M RT
Sbjct: 133 LCCTCAGTMMVAASANTLNQVFEIKNDAKMKRT 165


>02_01_0301 +
           2011707-2015423,2016982-2017182,2017670-2017786,
           2018030-2018122
          Length = 1375

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 237 HTLPASARISTAQNWRSKVPLKTQTTA-TVKNKVTQDTRVWKETPSYDRKSIRDSIV 404
           H     + +  A+N+   + + TQ +A T  ++V QDT  ++E   + R   RDSI+
Sbjct: 142 HLKEVKSILEKAKNFLGVLSVATQVSADTAGSRVIQDTTTFREEKVFGRDKDRDSII 198


>06_02_0136 +
           12195422-12195435,12196047-12196122,12196896-12197707,
           12197941-12198010,12199469-12199557,12199633-12199666
          Length = 364

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 444 NTTNDVNRDLDSIKQYCPVCSSCHMMVFPSILW 346
           N +     D++S  + CP+C      V PS+LW
Sbjct: 250 NNSPTSGMDVNSALRACPICRKLSYYVIPSVLW 282


>05_06_0182 +
           26179720-26179959,26180193-26180260,26180680-26180719,
           26181304-26181399,26181592-26181606
          Length = 152

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 377 QEEHTGQYCLMLSKSRLTSLVVLTSMAGY 463
           Q++H  QYC++  KS + ++V+L+  AG+
Sbjct: 74  QDQHRRQYCVVHLKSMVRAIVLLSLPAGF 102


>06_01_0035 + 358669-359007,359458-359617,359723-360582
          Length = 452

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 400 LFDAI*ITVNIISCVDVYGRIRTSTCPVSTYYLCILPVGTGLVSAAA 540
           L+D +    N+ S V  YG +  S+ PVS YY   LP G G  +A+A
Sbjct: 271 LYDIVAKRTNL-SHVSRYGDLSLSSQPVSLYY---LPPGPGTSTASA 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,796
Number of Sequences: 37544
Number of extensions: 323300
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)