Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30971.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_40209| Best HMM Match : Ank (HMM E-Value=0)                         27   2.5  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_43643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  

>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 121  ARRINLIMSYLKVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKT 279
            A R+N IM Y K+    L L+ G V  Y  P       + +F+HL E   H T
Sbjct: 1201 AHRLNTIMDYDKI----LVLERGRVAEYGTPQELMEMPDGVFRHLYESHVHHT 1249


>SB_40209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 885

 Score = 27.1 bits (57), Expect(2) = 2.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 130 INLIMSYLKVIHCTLCLKH-GYVGVYSKPVLFKITNNTLFQHLPEYQQH 273
           + L ++YL V+   L +K  G  G+YS P    IT+ T   H P +  H
Sbjct: 721 VTLFLAYLNVL---LYIKRIGSSGLYSDPYNKIITSTTHHHHHPYHHHH 766



 Score = 20.6 bits (41), Expect(2) = 2.5
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +1

Query: 346 PEYGRKHHHMTGRAYGTVLFDAI*ITVNIISCVDVYGRIRTSTCPVSTYYLCILPVGTGL 525
           P +   HHH T      ++   I I V ++  V V   I TS+   S+    ++  G  +
Sbjct: 761 PYHHHHHHHTTTIIIVIIIVIIIIIIVVVVVVVVVIIIIITSSSSPSSSSSSLIYSGASI 820

Query: 526 V 528
           V
Sbjct: 821 V 821


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 108 QLLNTII--YSKRIRSSVMHNNTIMFFEY 28
           QL  ++I   +KR+R SV+HNN  + F Y
Sbjct: 373 QLFRSVIDEETKRVRDSVIHNNETLSFTY 401


>SB_43643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 451 YGRIRTSTCPVSTYYLCILPVGTGLVSAAANSINQYHE 564
           YGR R   C  S YY+ +LPV T +    A S  +Y E
Sbjct: 47  YGR-RRYNCVRSIYYITVLPVSTSMTKRNAYS-TRYSE 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,823,723
Number of Sequences: 59808
Number of extensions: 394000
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)