Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30971.Seq
         (598 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p pro...    59   4e-09
AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA...    59   4e-09
AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse tran...    29   4.8  

>AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p
           protein.
          Length = 391

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 28/38 (73%), Positives = 32/38 (84%)
 Frame = +1

Query: 484 STYYLCILPVGTGLVSAAANSINQYHEVPFDGPMSRTK 597
           +T+ +C L  GTGLVSAAAN+INQYHEVPFD  MSRTK
Sbjct: 106 TTFAMCTL--GTGLVSAAANAINQYHEVPFDSQMSRTK 141



 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +2

Query: 410 LSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCLWG 517
           LSK RLTSLVV+T+M GYA+APA F  TTFA C  G
Sbjct: 79  LSKFRLTSLVVITTMGGYAMAPAAFDPTTFAMCTLG 114


>AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA
           protein.
          Length = 391

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 28/38 (73%), Positives = 32/38 (84%)
 Frame = +1

Query: 484 STYYLCILPVGTGLVSAAANSINQYHEVPFDGPMSRTK 597
           +T+ +C L  GTGLVSAAAN+INQYHEVPFD  MSRTK
Sbjct: 106 TTFAMCTL--GTGLVSAAANAINQYHEVPFDSQMSRTK 141



 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +2

Query: 410 LSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCLWG 517
           LSK RLTSLVV+T+M GYA+APA F  TTFA C  G
Sbjct: 79  LSKFRLTSLVVITTMGGYAMAPAAFDPTTFAMCTLG 114


>AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 76

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 260 SGRCWKSVLLVILNKTGFE*TPTYPC 183
           SGR W  +L  +L K GF   P+ PC
Sbjct: 36  SGREWNKLLNEVLQKIGFSSCPSEPC 61


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,292,672
Number of Sequences: 53049
Number of extensions: 578236
Number of successful extensions: 1178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)