Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30971.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical...    38   0.004
AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical...    38   0.004
Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +1

Query: 478 PVSTYYLCILPVGTGLVSAAANSINQYHEVPFDGPMSRTK 597
           PV+   L    VGT L+S+AAN+ NQ  E P+D  M RT+
Sbjct: 118 PVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQMRRTQ 157


>AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +1

Query: 478 PVSTYYLCILPVGTGLVSAAANSINQYHEVPFDGPMSRTK 597
           PV+   L    VGT L+S+AAN+ NQ  E P+D  M RT+
Sbjct: 118 PVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQMRRTQ 157


>Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical
           protein K09E9.3 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 121 ARRINLIMSYLKVIHCTLCLKHGYVGVY 204
           A+RI L  SYL +IH   CL   Y  +Y
Sbjct: 443 AKRIALFSSYLFIIHPVFCLNITYFHLY 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,877
Number of Sequences: 27780
Number of extensions: 297796
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)