Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30971.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -3

Query: 353 YSGVLGDFILYRCSCLSFKWNFTSPVLC 270
           Y G+      Y C      W  T+P +C
Sbjct: 476 YDGIRDMIGYYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -3

Query: 353 YSGVLGDFILYRCSCLSFKWNFTSPVLC 270
           Y G+      Y C      W  T+P +C
Sbjct: 529 YDGIRDMIGYYPCCWWKICWTITTPAIC 556


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 471 HLPRFNLLPLHSACGDWS 524
           H P    LPLH+ C D S
Sbjct: 437 HGPPLPPLPLHTECEDLS 454


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 471 HLPRFNLLPLHSACGDWS 524
           H P    LPLH+ C D S
Sbjct: 437 HGPPLPPLPLHTECEDLS 454


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 1   ESNLKCIHFIFKEHNRVVVHYTRPDSF 81
           E+N+  +H    ++  +V H+T  +SF
Sbjct: 343 EANVAVLHSFQMKNVTIVDHHTASESF 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,556
Number of Sequences: 438
Number of extensions: 4268
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)