Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30971.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44520.1 68415.m05535 UbiA prenyltransferase family protein s...    36   0.021
At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /...    30   1.0  
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ...    29   1.8  
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ...    29   1.8  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    29   2.4  

>At2g44520.1 68415.m05535 UbiA prenyltransferase family protein
           similar to SP|Q12887 Protoheme IX farnesyltransferase,
           mitochondrial precursor (EC 2.5.1.-) (Heme O synthase)
           {Homo sapiens}, SP|P21592 COX10 {Saccharomyces
           cerevisiae}
          Length = 431

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 466 TSTCPVSTYYLCILPVGTGLVSAAANSINQYHEVPFDGPMSRT 594
           T    +S   LC    GT +++A+ANS+NQ  E+  D  M RT
Sbjct: 122 TGNAAISFPGLCYTCAGTMMIAASANSLNQIFEISNDSKMKRT 164


>At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Brassica napus]
           GI:1212786; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 421 TVNIISCVDVY-GRIRTSTCPVSTYYLCILPVGTGLVSAAANSINQYHE 564
           T++ + C ++Y  R+  +TCP S Y + I+P  +  V    +SIN  ++
Sbjct: 204 TIHSVYCRNLYIHRVTANTCPESPYTIGIVPDSSENVCIQESSINMGYD 252


>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains zinc finger
           C-x8-C-x5-C-x3-H type (and similar) domains,
           Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
           domain, Pfam:PF00097
          Length = 323

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 420 DLDSIKQYCPVCSSCHMMVFPSILWCLG*LYSLPLQLSEF*VELY 286
           D++S  + CP+C      V PS++W     YS P +  E  +++Y
Sbjct: 216 DVNSTLRACPICRKLSYFVVPSVVW-----YSSPEEKKEI-IDIY 254


>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains zinc finger
           C-x8-C-x5-C-x3-H type (and similar) domains,
           Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
           domain, Pfam:PF00097
          Length = 323

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 420 DLDSIKQYCPVCSSCHMMVFPSILWCLG*LYSLPLQLSEF*VELY 286
           D++S  + CP+C      V PS++W     YS P +  E  +++Y
Sbjct: 216 DVNSTLRACPICRKLSYFVVPSVVW-----YSSPEEKKEI-IDIY 254


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
            contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
            PF04815: Sec23/Sec24 helical domain and PF04810:
            Sec23/Sec24 zinc finger
          Length = 1096

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 483  NGAGASAYPAIDVNTTNDVNRDLDSIKQYCPVCSSCHMMVFPSILWCLG*LYSLPL 316
            N   + A P +    TND    L S +++C   +S   ++ P  L  L  LY+L L
Sbjct: 859  NEIPSKALPLVKEQATNDCITILHSYRKFCATVTSTGQLILPEALKLLP-LYTLAL 913


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,284
Number of Sequences: 28952
Number of extensions: 269530
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)