Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30970.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   116   2e-27
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   116   2e-27
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    28   1.2  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   4.8  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   4.8  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.4  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.4  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   8.4  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  116 bits (280), Expect = 2e-27
 Identities = 53/75 (70%), Positives = 62/75 (82%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 211 DTGNFSWGSECSTRK 255
           D+GNFSWGSE  ++K
Sbjct: 61  DSGNFSWGSEGVSKK 75



 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = +3

Query: 246 NSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG--XKKGAXLT 419
           + +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G   KK     
Sbjct: 73  SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMGSKGKKATSTP 132

Query: 420 EAEEAIINKKRSQR 461
             +   + +K S R
Sbjct: 133 NPKSKHVQRKHSAR 146


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  116 bits (280), Expect = 2e-27
 Identities = 53/75 (70%), Positives = 62/75 (82%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 211 DTGNFSWGSECSTRK 255
           D+GNFSWGSE  ++K
Sbjct: 61  DSGNFSWGSEGVSKK 75



 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
 Frame = +3

Query: 246 NSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGXK-KGAXLTE 422
           + +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G K K A  T 
Sbjct: 73  SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMGSKGKKATATP 132

Query: 423 AEEA-IINKKRSQR 461
             ++  + +K S R
Sbjct: 133 TPKSKHVQRKHSAR 146


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 43   RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 216
            RD  +K +  G       K+ +   EL    +N  +  Q+   + S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 217  GNFSWGSECSTRKP 258
            G+     E +  KP
Sbjct: 1143 GDLMAVKEVALHKP 1156


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 46  DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 207
           + W K   T  K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 32  EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 19  DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 135
           + TK G  +     RRA     A  RKK K + GRP +N
Sbjct: 3   ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 367 YHCLNGVASTTTIAFLTRVFVRTNS 293
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
 Frame = -3

Query: 338 YNNCILDKGLCTHQFIVRCIIH-------NINDTGLRVEHSDPQEKLPVSRRSARYLVFP 180
           + N +  +   +H FI R +I+       +I D G  ++  + ++ L  + +   Y+++P
Sbjct: 540 FENSLYHQSFSSHWFISRLLINPIRMLCWHITDVGKTLDLGEAEKLLKYNHKQCPYIIYP 599


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 394 PRGNV*CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDAL 278
           P  ++  +  +CL  V +   I+F T  FVR N ++DAL
Sbjct: 544 PLASICSEDLNCLISVKNRL-ISFETHGFVRLNVVMDAL 581


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  DHWHKRRATGGKRAPIRKKRKYE 114
           D W   +A G   +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,963
Number of Sequences: 5004
Number of extensions: 46801
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)