Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30970.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 110 9e-25
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 109 1e-24
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.23
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 30 1.2
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.1
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 29 3.7
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563... 29 3.7
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 6.5
04_03_0549 - 17043135-17043351,17043641-17043846 27 8.6
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 110 bits (264), Expect = 9e-25
Identities = 53/76 (69%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 208 LDTGNFSWGSECSTRK 255
LDTGN+SWGSE TRK
Sbjct: 61 LDTGNYSWGSEAVTRK 76
Score = 85.0 bits (201), Expect = 4e-17
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGXKKGAXLT--EA 425
+TRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +G KK A +A
Sbjct: 76 KTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDA 135
Query: 426 EEAI 437
E A+
Sbjct: 136 EHAL 139
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 109 bits (263), Expect = 1e-24
Identities = 53/76 (69%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 208 LDTGNFSWGSECSTRK 255
LDTGN+SWGSE TRK
Sbjct: 61 LDTGNYSWGSEAVTRK 76
Score = 93.5 bits (222), Expect = 1e-19
Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 8/114 (7%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGXKKGAXLT--EA 425
+TRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +G KK A +A
Sbjct: 76 KTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDA 135
Query: 426 EEAIINKKRSQRQQENTWQGXVLLKLKVSRRAISH------KGVCLACVASRPG 569
E + ++ +++ L K + +R SH G LAC++SRPG
Sbjct: 136 AEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRPG 189
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 103 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 237
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>10_08_0663 -
19666476-19667017,19667664-19667755,19668039-19668095,
19668304-19668447,19668567-19668613,19668733-19668791,
19668975-19669045,19669274-19669341,19669431-19669598,
19669885-19669944,19670075-19670251
Length = 494
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -3
Query: 308 CTHQFIVRCIIHNINDTGLRVEHSDPQEKL--PVSRRSARYLVFPPRERTEWIR*GPSLV 135
C H+F ++C ++ + + RVE + P + P+ R P TE ++ +L
Sbjct: 316 CCHEFCIKCALYLCSTSNTRVEFTGPPGSIPCPLCRNGIMSFTKLPSTPTEGLKSSSALT 375
Query: 134 F 132
F
Sbjct: 376 F 376
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 207
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 192
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 192
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 157 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKPVSLMLC 276
+H+ R G+ +Y R G F G +C TR +LC
Sbjct: 1523 VHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLC 1562
>01_06_1154 -
34955235-34955827,34955912-34956045,34956142-34956389,
34956431-34956901
Length = 481
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 281 IIHNINDTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTE 162
++ + D G RV H + QEKL RR ++ P R+ TE
Sbjct: 288 VVDGVGDRGARVNHGEIQEKL---RRELDTVLGPGRQITE 324
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 43 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 165
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 380 IMRLIPLPEWSCIYYNNCILDKGL 309
++ L+ +P+WS +YY N +DK L
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKL 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,802
Number of Sequences: 37544
Number of extensions: 336741
Number of successful extensions: 922
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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