Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30970.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 116 1e-26
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 36 0.025
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 1.2
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 2.2
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051) 28 5.0
SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8) 27 8.7
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 27 8.7
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 116 bits (279), Expect = 1e-26
Identities = 59/106 (55%), Positives = 68/106 (64%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGXKKGAXLTEAEE 431
+ RIIDVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+G KK TE E+
Sbjct: 59 KARIIDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQ 118
Query: 432 AIINKKRSQRQQENTWQGXVLLKLKVSRRAISHKGVCLACVASRPG 569
I+NKKRS K+ G ACV+SRPG
Sbjct: 119 EILNKKRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPG 164
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/56 (71%), Positives = 47/56 (83%)
Frame = +1
Query: 88 PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 255
P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRK 59
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 261 IIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 377
I+ V+++ +N E + +VK +IV VD PF W++ +
Sbjct: 75 ILSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 148 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSE-CSTRKPVSLMLCIMHLTMN 297
P++I ++ GG+TK +ALR++ G ++ S+ P+ L +MH N
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPI---LSVMHSFAN 84
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
Frame = -1
Query: 376 CDSYHCLNGVASTTTIAFLTRVFVRTNSLL--DALYTTSMIRVCELNIPIPKRSYRCPDA 203
C Y C V +TT +A + ++++ S + A+ R C N
Sbjct: 700 CPGYKCATPVDNTTILALVPELYLKYTSQVRQKAVEANPSWRWCPGNKCSLVNKVTKRSC 759
Query: 202 AHGT*YFHHVNERSGFAEGRAWCLQRDALTHTSSSCVWAHVSHRWPFAY 56
HG + + A G+ WC + TH + C A + AY
Sbjct: 760 YHGNTFLDYGGVPVACACGKTWCSECQEETHWPAKCEIAQRFRKQTKAY 808
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 64 RATGGKRAPIRKKRKYELGRPAANTRLGP 150
R GG R P+++ +E +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 7 VFFFDPTKMGISRDHWHKRRATG--GKRAPIRKKRKYELG 120
VF P+K S+ K+ ATG GK AP +KK+K+ G
Sbjct: 474 VFSDSPSKNKESKSTKRKKSATGGEGKEAPAKKKQKHNDG 513
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 22 PTKMGISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 168
P +S D W K++ K+ I+KKR+ + A LG QR+ +
Sbjct: 383 PKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432
>SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)
Length = 387
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 272 NINDTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTEW 159
++ D +RV+H + EK +S + F PR +T W
Sbjct: 114 SLRDFSIRVKHRNRMEKSTLSEFLETRVCFTPRRKTLW 151
>SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8)
Length = 282
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 477 WQGXVLLKLKVSRRAISHKGVCLACVASR 563
W G +L+++ RRAI + + L +A R
Sbjct: 17 WYGGILMEVNKQRRAIKQQAISLDVIAKR 45
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 125 PLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 250
P ++P L +TP VHVV + R V +TS+ +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,118,086
Number of Sequences: 59808
Number of extensions: 376967
Number of successful extensions: 938
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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