Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30970.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   113   9e-26
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    29   3.3  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  113 bits (272), Expect = 9e-26
 Identities = 51/75 (68%), Positives = 59/75 (78%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 211 DTGNFSWGSECSTRK 255
           D+GNFSW SE +TRK
Sbjct: 61  DSGNFSWASEQTTRK 75



 Score =  109 bits (263), Expect = 1e-24
 Identities = 54/106 (50%), Positives = 69/106 (65%)
 Frame = +3

Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGXKKGAXLTEAEE 431
           +TRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL  KK A L+E + 
Sbjct: 75  KTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDN 134

Query: 432 AIINKKRSQRQQENTWQGXVLLKLKVSRRAISHKGVCLACVASRPG 569
           AI+NKKRS    +   +      +        + G  LA ++S PG
Sbjct: 135 AILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/86 (29%), Positives = 35/86 (40%)
 Frame = +3

Query: 288  NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGXKKGAXLTEAEEAIINKKRSQRQQ 467
            N+E    K L K+  +  D T +RQW E          K   L E+    + ++  +RQ 
Sbjct: 1696 NDEDAARKLLSKHRALCEDMTTYRQWLEKLEV------KCVELVESNRPHV-ERFQKRQD 1748

Query: 468  ENTWQGXVLLKLKVSRRAISHKGVCL 545
            E   +   L KL   RR      VCL
Sbjct: 1749 ELVREFDALSKLAEDRRNALEDAVCL 1774


>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/86 (29%), Positives = 35/86 (40%)
 Frame = +3

Query: 288  NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGXKKGAXLTEAEEAIINKKRSQRQQ 467
            N+E    K L K+  +  D T +RQW E          K   L E+    + ++  +RQ 
Sbjct: 1696 NDEDAARKLLSKHRALCEDMTTYRQWLEKLEV------KCVELVESNRPHV-ERFQKRQD 1748

Query: 468  ENTWQGXVLLKLKVSRRAISHKGVCL 545
            E   +   L KL   RR      VCL
Sbjct: 1749 ELVREFDALSKLAEDRRNALEDAVCL 1774


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
            spectrin homolog Sma1 protein.
          Length = 4063

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/86 (29%), Positives = 35/86 (40%)
 Frame = +3

Query: 288  NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGXKKGAXLTEAEEAIINKKRSQRQQ 467
            N+E    K L K+  +  D T +RQW E          K   L E+    + ++  +RQ 
Sbjct: 1696 NDEDAARKLLSKHRALCEDMTTYRQWLEKLEV------KCVELVESNRPHV-ERFQKRQD 1748

Query: 468  ENTWQGXVLLKLKVSRRAISHKGVCL 545
            E   +   L KL   RR      VCL
Sbjct: 1749 ELVREFDALSKLAEDRRNALEDAVCL 1774


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,732
Number of Sequences: 27780
Number of extensions: 275919
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)