Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30970.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   156   1e-40
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   1.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   1.3  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   4.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   4.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.9  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   9.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   9.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   9.2  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  156 bits (379), Expect = 1e-40
 Identities = 68/75 (90%), Positives = 73/75 (97%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 211 DTGNFSWGSECSTRK 255
           DTGNFSWGSEC+TRK
Sbjct: 61  DTGNFSWGSECTTRK 75



 Score =  137 bits (332), Expect = 7e-35
 Identities = 66/106 (62%), Positives = 79/106 (74%)
 Frame = +3

Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGXKKGAXLTEAEE 431
           +TRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY LPLG K+GA LTEAEE
Sbjct: 75  KTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEE 134

Query: 432 AIINKKRSQRQQENTWQGXVLLKLKVSRRAISHKGVCLACVASRPG 569
            ++NKKRS++ +          K++ +       G  LAC++SRPG
Sbjct: 135 EVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPG 180


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 338 YNNCILDKGLCT 303
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 338 YNNCILDKGLCT 303
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 338 YNNCILDKGLCTHQ 297
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 338 YNNCILDKGLCTHQ 297
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 371 LIPLPEWSCIYYNNC 327
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 338 YNNCILDKGLCT 303
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 338 YNNCILDKGLCT 303
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 338 YNNCILDKGLCT 303
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,640
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)