Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30969.Seq
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   109   1e-24
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    28   3.4  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    28   3.4  
AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.      27   5.9  
AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical...    27   5.9  
Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  109 bits (261), Expect = 1e-24
 Identities = 46/58 (79%), Positives = 53/58 (91%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGICATHSSRFIPLK 427
           ++VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKPVKHGRPGI ATHSSRFIPLK
Sbjct: 94  ELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 48/82 (58%), Positives = 56/82 (68%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           LKKKR FRKF YRGVDLDQLLDM  EQ  +L+          GLKRK +AL+ K+++AKK
Sbjct: 12  LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71

Query: 189 EAPPNEKPEIVKTXLRXMIIVP 254
            A   EKP  VKT LR MII+P
Sbjct: 72  AAGVLEKPATVKTHLRDMIILP 93


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN 99
           T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 5   TATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN 99
           T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 5   TATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 333 WPIISGLISTWLKV-FPL*MPTIEPTIWER 247
           W I++G++   + + F L +P I PT+W +
Sbjct: 5   WTIVAGVLYAEIAITFTLLLPWIRPTLWSK 34


>AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical
           protein Y54G2A.18 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 333 WPIISGLISTWLKV-FPL*MPTIEPTIWER 247
           W I++G++   + + F L +P I PT+W +
Sbjct: 5   WTIVAGVLYAEIAITFTLLLPWIRPTLWSK 34


>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/75 (25%), Positives = 39/75 (52%)
 Frame = -3

Query: 496 VTLIVISCKFCVTLSXEVVLDALLERNEP*AVCSTDTGSTVLYRLVRD*ELSEVMADHLR 317
           +TLI+++C+  V L      ++   RN      ST +     +R+++  + SE+     R
Sbjct: 273 ITLIIVNCRIVVALK-----ESTRMRNGQSMKKSTQSRIMNNFRMLKGAKYSELFGRFGR 327

Query: 316 LDFNLVKSFSVVNAD 272
           L+FN +K+ S++  +
Sbjct: 328 LNFNPLKTPSLLKTN 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,920,204
Number of Sequences: 27780
Number of extensions: 176840
Number of successful extensions: 394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)