Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30967.Seq
(409 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 84 9e-18
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 59 2e-10
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 1.5
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 2.6
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 25 4.5
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c... 24 7.9
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 24 7.9
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 24 7.9
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 24 7.9
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 24 7.9
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 83.8 bits (198), Expect = 9e-18
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 174
+++ + P VLF I+D R++ ++ RVIGTLLGT D +E+ +CF VPH E ++QVE
Sbjct: 21 LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80
Query: 175 AELNYAMDVYELNRRVNSSESIVGWWA 255
E+ Y +Y L+ + N E +VGW+A
Sbjct: 81 VEMEYHRAMYHLHLKANPREVVVGWYA 107
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 59.3 bits (137), Expect = 2e-10
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 177
V VHP+VL VD+Y R RV+G LLG ++ VV V N + +P +E
Sbjct: 17 VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76
Query: 178 -ELNYAMDVYELNRRVNSSESIVGWW 252
+ N+ + E+ +++N++E +VGW+
Sbjct: 77 LDHNFMESMNEMFKKINANEKLVGWY 102
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 1.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 49 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 174
Y+ R DSHR I L GT + + + + +K H ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 2.6
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 60 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 203
+ R S SY I ++ SGG + + L A RTC S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 328 CTGSRHSRE*YSCITE 281
C+ RH E YSC+TE
Sbjct: 387 CSQKRHLEEDYSCLTE 402
>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 204
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 325 TGSRHSRE*YSCITEEWLVTSLPVPTNQQYFQRN*LFCSARKHP 194
+G H ++ CI + P+ TN YF + FC R P
Sbjct: 55 SGKGHDKQLRGCIGT---FRARPLVTNLTYFSKQAAFCDERFRP 95
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 323 CTCYSGHFAGWRSNGFTCI 379
C+C+SG F G + G T I
Sbjct: 176 CSCFSGAFGGLIATGLTKI 194
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 271 PTTPLLYTSIIPVNAVSLYMLLWTLRWLEVEWVYVHMF 384
PT P+L S + A + LL+ ++ V W ++ F
Sbjct: 657 PTQPVLEPSYREIVAFITFFLLFAFIFVAVIWTWISAF 694
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 42 GRIRTSKCRFSQSYRHLIGHERQRS 116
G+ KCR ++ HL+GHE + S
Sbjct: 281 GQYHKYKCRPAEYVCHLLGHEGEGS 305
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 7.9
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = -1
Query: 409 PFGTPNGTQTYARKPIRPPASEVSRVTCTGSRHSRE*YSCITEEWLVTSLPVPTNQQYF 233
P G+ +Q A I S +T G S YS TEE L+T L T+ F
Sbjct: 903 PTGSYEVSQPLANVTILGLTESPSSITLNGQNVSSFQYSNDTEELLITGLQNITSSGAF 961
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,752
Number of Sequences: 5004
Number of extensions: 40412
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -