Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30967.Seq
(409 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 1e-08
SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.16
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 30 0.63
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6) 29 1.5
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4) 28 2.6
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 28 3.4
SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25) 28 3.4
SB_28652| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44) 27 5.9
SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0) 27 5.9
SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 27 7.8
SB_41612| Best HMM Match : OstA (HMM E-Value=5.2) 27 7.8
SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05) 27 7.8
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 27 7.8
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 55.6 bits (128), Expect = 1e-08
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Frame = +1
Query: 4 SVKVHPVVLFQIVDAYERRN--ADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE-HADQVE 174
+V VHP+VL +VD + R RV+G LLG+ KGV++V NCF VP E DQ
Sbjct: 10 TVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFDEDDRDQNV 69
Query: 175 --AELNYAMDVYELNRRVN 225
+ +Y ++Y + ++VN
Sbjct: 70 WFLDHDYLENMYAMFKKVN 88
>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAEL 183
V+V + + +I+ E + V G LLG +E+TNCF P +K D+ + ++
Sbjct: 18 VQVDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDV 77
Query: 184 NYAMDVYELNRRVNSSESIVGWW 252
NY M+V R VN VGW+
Sbjct: 78 NYQMEVMRRLRAVNIDHLHVGWY 100
>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 32.3 bits (70), Expect = 0.16
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 169 VEAELNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSI 300
V EL YA +YEL+++ N +E IVG + + T +++ I
Sbjct: 1 VAVELEYAKSMYELSQKANPNEQIVGCVKMGVPGKTEGTMFSQI 44
>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 1414
Score = 30.3 bits (65), Expect = 0.63
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -1
Query: 364 IRPPASEVSRVTCTGSRHSRE*YSCITEEWLVTSLP 257
+R A++V + C ++ + C+TE WL +++P
Sbjct: 688 VRSLANKVDELECVARQNRADRVVCVTESWLTSNIP 723
>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 29.9 bits (64), Expect = 0.84
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 364 IRPPASEVSRVTCTGSRHSRE*YSCITEEWLVTSLP 257
+R A++V + C +R +R C+TE WL +++P
Sbjct: 194 VRSLANKVDELECV-ARQNRADVVCVTESWLTSNIP 228
>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
Length = 219
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -1
Query: 238 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 59
Y+ + CS + PSR +P R R + +R+ W++ +CR P R L ++F
Sbjct: 36 YYNYRHVRCSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP-RSSNLHNYINF 92
Query: 58 DVRMRPQFEIK 26
R F+ K
Sbjct: 93 GRLRRRYFDSK 103
>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 238 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 59
Y+ + CS + PSR +P R R + +R+ W++ +CR+ P R L ++F
Sbjct: 90 YYNYRHVRCSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP-RSSNLHNYINF 146
Query: 58 D-VRMRP 41
+R RP
Sbjct: 147 GRLRRRP 153
>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
Length = 270
Score = 28.3 bits (60), Expect = 2.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 332 YSGHFAGWRSNGFTCICL 385
++GH W SNG TC+ L
Sbjct: 201 FNGHTYSWHSNGVTCVLL 218
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 6 CEGPSCCFISNCGRIRTSKCRF 71
C G + CFI R R KCRF
Sbjct: 78 CRGSNDCFIDKVHRNRCQKCRF 99
>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 361 RPPASEVSRVTCTGSRHSRE*YSCITEEWLVTSLP 257
R A ++S + C S++S + CITE WL + P
Sbjct: 133 RSLAPKISELQCVASQNSAD-VVCITETWLTDNNP 166
>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
Length = 867
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 361 RPPASEVSRVTCTGSRHSRE*YSCITEEWLVTSLP 257
R A ++S + C S++S + CITE WL + P
Sbjct: 133 RSLAPKISELQCVASQNSAD-VVCITETWLTDNNP 166
>SB_28652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 364 IRPPASEVSRVTCTGSRHSRE*YSCITEEWLVTSLP 257
+R AS++ C S +S + C+TE WL +P
Sbjct: 196 VRSLASKMDEPECVSSINSAD-VICVTETWLTNHIP 230
>SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44)
Length = 552
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 400 TPNGTQTYARKPIRPPASEVSRVTCTGSRHSR 305
TPN TQ + ++P SEV+ C GS SR
Sbjct: 488 TPN-TQQFRKRPSHGSNSEVTTKVCPGSVRSR 518
>SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 979
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +1
Query: 115 VVEVTNCFCVPHKEHADQVEAELNYAMDVYELN----RRVNSSESIVG 246
++ + +C + HKEHAD+ E++ A+ ++ LN R + + E VG
Sbjct: 706 IIALNSCRVMLHKEHADE-ESDYINAVFLHRLNSFTSREIPAEEKSVG 752
>SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 969
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 381 HMHVNPFDLQPAKCPE*HVQAHGIHGNNT 295
H +P D Q C E H+QA GIHG ++
Sbjct: 117 HASAHP-DFQKI-CDEFHIQARGIHGEHS 143
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 381 HMHVNPFDLQPAKCPE*HVQAHGIHGNNT 295
H +P D Q C E H+QA GIHG ++
Sbjct: 549 HASAHP-DFQKI-CDEFHIQARGIHGEHS 575
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 408 HLALPMVHKHMHVNPFDLQPAKCPE*HVQAHGIHGNNT 295
H+ +P +H D Q C E H+QA GIHG ++
Sbjct: 896 HVKIPKASEHP-----DFQKI-CDEFHIQARGIHGEHS 927
>SB_41612| Best HMM Match : OstA (HMM E-Value=5.2)
Length = 442
Score = 26.6 bits (56), Expect = 7.8
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 1/111 (0%)
Frame = -2
Query: 330 HVQAHGIHGNNTRV*QRSGWLLHCQCPPTNNTFRGIDSSVQLVNIHRVIKFRFDLIGMFF 151
H GIH NN V +H N +GI+++ Q VN I + F
Sbjct: 235 HTNNQGIHTNNQSVHTSHNICIHTNNQGLNTNNKGINTNNQGVNTSHNICIYTN--NQDF 292
Query: 150 VWHAEAVGYFHHSFVARAQ*GAD-NSVRICISTFVCVHNLK*NNRMDLHTN 1
+ + V H+ + G + N+ S +CVH N +HTN
Sbjct: 293 NTNNQGVHTSHNICIHTNNQGLNTNNQDFDTSDNICVH----TNNQGIHTN 339
>SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05)
Length = 662
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +1
Query: 277 TPLLYTSIIPVNAVS-LYMLLWT 342
TP+L+T ++ VN++S ++M LW+
Sbjct: 453 TPMLFTMVMLVNSLSEVFMFLWS 475
>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 725
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 408 HLALPMVHKHMHVNPFDLQPAKCPE*HVQAHGIHGNNT 295
H+ +P +H D Q C E H+QA GIHG ++
Sbjct: 651 HVKIPKASEHP-----DFQKI-CDEFHIQARGIHGEHS 682
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 139 CVPHKEHADQVE--AELNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVN 312
C P ++ +E ++++ L+ R+ + I+ AL + T+P++Y + +P+N
Sbjct: 112 CTPENKYVSPIELSSQVDNLTSYNNLSNRLTITSPIIYPTALPI---TSPIIYPTALPIN 168
Query: 313 AVSLY 327
+Y
Sbjct: 169 PPIIY 173
>SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 368 THSTSSQRSVQSNMYRLTAFTGIILVYNRGVVGYF 264
TH T ++Q+ + L F I++Y R GY+
Sbjct: 125 THKTIGSSAIQNAGFLLITFIRQIILYPRSYAGYY 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,964,002
Number of Sequences: 59808
Number of extensions: 330734
Number of successful extensions: 1204
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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