Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30967.Seq
(409 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 2.3
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 3.1
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 22 3.1
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 4.1
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 21 4.1
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 21 4.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 5.4
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 7.1
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 20 9.4
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 20 9.4
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 20 9.4
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 142 RRSSWLLPPLLCRSCPIRCR 83
RRS + PP +CP+ C+
Sbjct: 333 RRSEPVEPPRRKNNCPLHCK 352
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.8 bits (44), Expect = 3.1
Identities = 15/81 (18%), Positives = 31/81 (38%)
Frame = +1
Query: 10 KVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNY 189
+++P F E +N R + G ++ V + + + E +L+Y
Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMREYNDPEYKLDY 223
Query: 190 AMDVYELNRRVNSSESIVGWW 252
M+ ELN ++ +W
Sbjct: 224 FMEDVELNAYYYYMREMLPYW 244
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 21.8 bits (44), Expect = 3.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 184 NYAMDVYELNRRVNSSE 234
NY DVY+ N V+S E
Sbjct: 7 NYYGDVYQWNHTVSSGE 23
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.4 bits (43), Expect = 4.1
Identities = 15/81 (18%), Positives = 31/81 (38%)
Frame = +1
Query: 10 KVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNY 189
+++P F E +N R + G ++ V + + + E +L+Y
Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKNMREYNDPEYKLDY 223
Query: 190 AMDVYELNRRVNSSESIVGWW 252
M+ ELN ++ +W
Sbjct: 224 FMEDVELNAYYYYMREMLPYW 244
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 4.1
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Frame = +3
Query: 6 CEGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 149
C C I R R CR+ + R + ERQR+ +Q + +T
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 4.1
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Frame = +3
Query: 6 CEGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 149
C C I R R CR+ + R + ERQR+ +Q + +T
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 331 LLWTLRWLEVEWV 369
+L T WL++EWV
Sbjct: 32 ILTTNAWLKLEWV 44
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 331 LLWTLRWLEVEWV 369
+L T WL++EWV
Sbjct: 32 ILTTNAWLKLEWV 44
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 331 LLWTLRWLEVEWV 369
+L T WL++EWV
Sbjct: 32 ILTTNAWLKLEWV 44
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 331 LLWTLRWLEVEWV 369
+L T WL++EWV
Sbjct: 32 ILTTNAWLKLEWV 44
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 331 LLWTLRWLEVEWV 369
+L T WL++EWV
Sbjct: 32 ILTTNAWLKLEWV 44
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 331 LLWTLRWLEVEWV 369
+L T WL++EWV
Sbjct: 32 ILTTNAWLKLEWV 44
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 5.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 331 LLWTLRWLEVEWV 369
+L T WL++EWV
Sbjct: 100 ILTTNAWLKLEWV 112
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 5.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 331 LLWTLRWLEVEWV 369
+L T WL++EWV
Sbjct: 100 ILTTNAWLKLEWV 112
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 5.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 331 LLWTLRWLEVEWVYVHM 381
LL T WL++EW V+M
Sbjct: 69 LLITNLWLKLEWNDVNM 85
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 20.6 bits (41), Expect = 7.1
Identities = 5/19 (26%), Positives = 12/19 (63%)
Frame = -1
Query: 289 ITEEWLVTSLPVPTNQQYF 233
++ EW + +P N++Y+
Sbjct: 211 LSVEWDILEVPASRNEEYY 229
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 20.2 bits (40), Expect = 9.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 286 LYTSIIPVNAVSLYMLLW 339
L TSII +N +L ++W
Sbjct: 277 LKTSIILMNGTTLPQIMW 294
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 20.2 bits (40), Expect = 9.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 280 PLLYTSIIPVNAVSLYMLLWTLRWL 354
PL+ ++ V AV + L W R+L
Sbjct: 1616 PLIVATVALVVAVVIVALRWRSRYL 1640
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.2 bits (40), Expect = 9.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 280 PLLYTSIIPVNAVSLYMLLWTLRWL 354
PL+ ++ V AV + L W R+L
Sbjct: 1612 PLIVATVALVVAVVIVALRWRSRYL 1636
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,211
Number of Sequences: 438
Number of extensions: 3048
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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