Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30967.Seq
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 81 3e-16
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 74 4e-14
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 73 7e-14
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 49 1e-06
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.52
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.52
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 27 3.7
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 27 3.7
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 27 3.7
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 27 4.8
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi... 27 6.4
At5g65100.1 68418.m08189 ethylene insensitive 3 family protein c... 27 6.4
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id... 27 6.4
At1g77690.1 68414.m09046 amino acid permease, putative similar t... 26 8.5
At1g48390.1 68414.m05405 syntaxin-related family protein contain... 26 8.5
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 81.0 bits (191), Expect = 3e-16
Identities = 34/86 (39%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 177
++ ++HP+V+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85
Query: 178 ELNYAMDVYELNRRVNSSESIVGWWA 255
+++Y ++ + +VNS E+IVGW++
Sbjct: 86 DIDYHHNMLASHLKVNSKETIVGWYS 111
Score = 45.2 bits (102), Expect = 2e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +3
Query: 255 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYV 383
TG V SS+IH++Y+RE P+H+T+DT G ++A+V
Sbjct: 112 TGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFV 154
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 73.7 bits (173), Expect = 4e-14
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 175 AELNYAMDVYELNRRVNSSESIVGWWALAMK 267
+ NY ++ + +R+N+ E +VGW++ K
Sbjct: 77 LDHNYHESMFHMFKRINAKEHVVGWYSTGPK 107
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 72.9 bits (171), Expect = 7e-14
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R D S RV+G LLG+S +G V+VTN + VP +E
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76
Query: 175 AELNYAMDVYELNRRVNSSESIVGWWALAMK 267
+ NY ++ + +R+N+ E IVGW++ K
Sbjct: 77 LDHNYHESMFHMFKRINAKEHIVGWYSTGPK 107
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 48.8 bits (111), Expect = 1e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 252
V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW+
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.52
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.52
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 27.5 bits (58), Expect = 3.7
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 166 QVEAELNYAMDVYELNRRVNSSESIVGWWALAMK*---PTTPLL--YTSIIPVNAVSLYM 330
Q + E+ + D+ L + + S + G K T LL YT+++PVNAVSL
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 331 LL 336
LL
Sbjct: 245 LL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.5 bits (58), Expect = 3.7
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 166 QVEAELNYAMDVYELNRRVNSSESIVGWWALAMK*---PTTPLL--YTSIIPVNAVSLYM 330
Q + E+ + D+ L + + S + G K T LL YT+++PVNAVSL
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 331 LL 336
LL
Sbjct: 245 LL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.5 bits (58), Expect = 3.7
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 166 QVEAELNYAMDVYELNRRVNSSESIVGWWALAMK*---PTTPLL--YTSIIPVNAVSLYM 330
Q + E+ + D+ L + + S + G K T LL YT+++PVNAVSL
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 331 LL 336
LL
Sbjct: 245 LL 246
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 27.1 bits (57), Expect = 4.8
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = -1
Query: 385 QTYARKPIRPPASEVSRVTCTGSRHSRE*YSCITEEWLVTSLPVPTNQQYFQRN*LFCSA 206
++ +R PIR P VSR SR S + ++ PV ++++ R+ + S
Sbjct: 557 RSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLS- 615
Query: 205 RKHPSRN*VPLRLDR 161
R+ SR+ P+RL R
Sbjct: 616 RRSISRS--PIRLSR 628
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 611
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 280 PLLYTSIIPVNAVSLYMLLWTLRWLEVEWVYVHM 381
P+L ++ NA+ L + TL+W V WV+V +
Sbjct: 335 PVLEPDLVVYNAI-LNACVPTLQWKAVSWVFVEL 367
>At5g65100.1 68418.m08189 ethylene insensitive 3 family protein
contains Pfam profile: PF04873 ethylene insensitive 3
Length = 557
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 80 LSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRW 196
L+ P+W T+ WW A+A P + +L W
Sbjct: 215 LAPPWWPNGTELWWGEQGAAAFEHGPPPYRKPHDLRKAW 253
>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
Length = 485
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVW 145
D++V L+ IH+ I F F ++FVW
Sbjct: 312 DAAVILMLIHQFITFGFACTPLYFVW 337
>At1g77690.1 68414.m09046 amino acid permease, putative similar to
AUX1 (regulator of root gravitropism, putative permease)
GI:1531758 GB:CAA67308 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 470
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVW 145
D++V L+ IH+ I F F ++FVW
Sbjct: 310 DTAVILMLIHQFITFGFASTPLYFVW 335
>At1g48390.1 68414.m05405 syntaxin-related family protein contains a
novel domain similar to F-box that is shared among other
proteins in Arabidopsis; similar to proteins At3g54160,
At1g47920 (syntaxin SYP81), At5g41830, At3g44180,
At3g58890, At1g56610, At1g48390, At3g59270 [Arabidopsis
thaliana]
Length = 413
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 142 RRSSWLLPPLLCRSCP 95
+R+ W + PLL RSCP
Sbjct: 299 KRNGWQVMPLLIRSCP 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,244,388
Number of Sequences: 28952
Number of extensions: 218922
Number of successful extensions: 557
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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