Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30965.Seq
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    40   8e-05
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    37   8e-04
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    36   0.001
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    36   0.001
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   1.1  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   1.5  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   1.9  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   2.5  
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    25   3.4  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    25   3.4  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    25   3.4  
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    25   4.4  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    24   5.9  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    24   7.8  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    24   7.8  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    24   7.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   7.8  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    24   7.8  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 40.3 bits (90), Expect = 8e-05
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 83  KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAE 256
           K  + PKR MSA++ +    R K+K DNP     ++    G+ W+ +   ++  +EEKA 
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKAR 70

Query: 257 KPK 265
           + K
Sbjct: 71  QDK 73


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 37.1 bits (82), Expect = 8e-04
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +2

Query: 95  KPKRPMSAYLLWLNSARSKIKDD--NPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAEK 259
           +PKRP SAY L+  + RS+IK+        V E+ K   E W S+   D+  +EE+A K
Sbjct: 116 QPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASK 174


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +2

Query: 89  TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 220
           T++  RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +2

Query: 89  TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 220
           T++  RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -2

Query: 255 SAFSSHSLLSYMDLQISPAFLAISVTFNPGLS----SFIFDLALFNHNKYADI 109
           S+ +SH   S +DL    A   + +TF P  S    + +FDL L  H  Y D+
Sbjct: 804 SSDTSHPYKSALDLYDFMAHRVV-ITFEPRYSDDTNNGVFDLVLTTHTNYTDM 855


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
 Frame = -2

Query: 330 LFFLYGTAAICIK*F*IYNVLFFGFSAFSSHSLLS-------YMDLQISPAFLAISVTFN 172
           LFF     A C      Y++  +  SAF+ HSLLS        +   I P    +S  F 
Sbjct: 103 LFFAISFQAECY-----YSLTAYATSAFAGHSLLSTIAVANNIISAAIKPPLARLSDVFG 157

Query: 171 PGLSSFIFDLALF 133
             L +F+F L L+
Sbjct: 158 -RLEAFLFSLLLY 169


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 287 SKSTMYCSLAFPPFLPIRFCHTWT 216
           S   + C  + P F+   FCH WT
Sbjct: 246 SSLLLMCLPSHPDFISPEFCHEWT 269


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 191 AKKAGEIWRSMYDKSEWEEKAEKPKNNT 274
           AKKA    +   D+SE EE A   KNNT
Sbjct: 178 AKKAQVKKKRTKDESEQEEAASPKKNNT 205


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 35  TKITRFCRIKIHI*GFKMTDKPKR 106
           +K+ RFCR K H   FKM   P++
Sbjct: 26  SKVFRFCRSKCHK-NFKMKRNPRK 48


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 201 AFLAISVTFNPGLSSFIFDLALFNHNKYAD 112
           +F A +VTF PG+ S  F L    HN+  D
Sbjct: 105 SFTANTVTFTPGM-SVAFKLPYTRHNEGGD 133


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 128 WLNSARSKIKDDNPGL 175
           W N+ RS ++DDN G+
Sbjct: 411 WSNTLRSSVEDDNTGV 426


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +1

Query: 148 KNKG*QSRIKSNGDSQK--SRRNLEVHV*QKRMGRKGGKAKE--QYIVDLESF 294
           +N G ++++  N + Q+  SR NLE    + ++  KGG  KE  +++   ESF
Sbjct: 3   ENAGNETKLVENENLQEDLSRLNLEDEKNELKLNEKGGVLKENDEHLECSESF 55


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 293 NDSKSTMYCSLAFPPFLPIRFCHT 222
           NDS  ++Y   A PPFL   F  T
Sbjct: 421 NDSSQSVYGLFALPPFLMSPFTGT 444


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 107 PMSAYLLWLNSARSKIKDDNPG-LKVTEIA 193
           P   +L+W+ +  SKI D  P  + VTE A
Sbjct: 208 PRGGFLVWVETKFSKIIDAIPNYISVTEAA 237


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = -2

Query: 234  LLSYMDLQISPAFLAISVTFNPGLS------SFIFDLALF-NHNKY 118
            LL Y+  +  P F    + F PG+S      S I D+ +F NH K+
Sbjct: 890  LLKYIFTEGDPKFSKCVLVFLPGISEILRVKSLIEDMPMFRNHRKF 935


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 195 KKQAKSGGPCMTKANGKKRRKSQRTIHCRF 284
           KK AKS  P  T  NG    K+ + + C+F
Sbjct: 20  KKSAKSTLPKNTPENGVSTVKNLQHVPCKF 49


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 247 KGGKAKEQYIVDLESFNANG---GGPVEKKKKTQK 342
           K  KAK   + +  S NANG     P + KKKT K
Sbjct: 533 KSKKAKASKLANDTSKNANGETKSTPKKSKKKTSK 567


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 296 LNDSKSTMYCSLAFP-PFLPIR 234
           +N  KST  C L FP P L ++
Sbjct: 70  INTKKSTTICELTFPTPLLAVK 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,336
Number of Sequences: 5004
Number of extensions: 29708
Number of successful extensions: 102
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)