Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30965.Seq
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 47 4e-06
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 46 1e-05
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 43 8e-05
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 42 1e-04
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 42 1e-04
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 40 7e-04
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 39 0.001
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 37 0.004
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 28 1.8
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 28 2.3
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 27 3.1
02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021... 27 3.1
12_02_0579 + 20764626-20765123,20765135-20766064,20767181-207672... 27 5.3
03_05_0506 + 25010059-25010089,25010606-25010654,25010812-250108... 26 7.1
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 26 7.1
08_02_0168 - 13640894-13641973 26 9.3
04_03_0070 + 10677677-10679989 26 9.3
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 47.2 bits (107), Expect = 4e-06
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 223
K + PKR M+ ++ + + R +K++NP L TEIAKK GE+W+ M
Sbjct: 594 KDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAE 256
K + PKR ++ ++ + + R+ +K+ NP L TEIAKK GE W+ M +K + E+++
Sbjct: 553 KDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQ 612
Query: 257 KPK 265
K
Sbjct: 613 VDK 615
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 42.7 bits (96), Expect = 8e-05
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD 229
K +KPKRP SA+ +++ R K+ +P +K V+ I K G+ W+SM D
Sbjct: 30 KDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = +2
Query: 95 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKAEKPK 265
K KRP +A+ L+++ R + K ++P K V+ +AK+ GE W+SM DK + +KA + K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Frame = +2
Query: 95 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKAEKPK 265
KPKRP SA+ ++++ R + + +P K V ++K AGE WR+M +K+ + +KA + K
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKK 91
Query: 266 NN 271
+
Sbjct: 92 QD 93
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 39.5 bits (88), Expect = 7e-04
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 95 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYDKSEWEEKAEKP 262
KPKR ++ + +L R + + +P K V + K AGE WR+M D+ + + +KP
Sbjct: 24 KPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKP 80
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 95 KPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 223
+PK+P +A+ ++ R K++NP +K + E+ K GE W +M
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAEKPK 265
K+P AY+LW ++IK ++P E++ G W+++ +K +EE+ + K
Sbjct: 158 KKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQPYEERYRQEK 214
Score = 37.1 bits (82), Expect = 0.004
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAE 256
K KPK+PMSAY ++ R+ + + V EI + GE W++M +K+ +E A
Sbjct: 280 KDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSEAEKAPFEAAAR 337
Query: 257 KPK 265
K +
Sbjct: 338 KQR 340
Score = 36.7 bits (81), Expect = 0.005
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKA 253
++PK+P S++LL+ AR ++ ++ PG+ + + W+ + +K W KA
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKA 467
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 320 STGPPPFALNDSKSTMYCSLAFPPFLPIRFCHTWTSRFR 204
+T P PF+L+ S ST C+ P R WT + R
Sbjct: 42 ATRPSPFSLSPSISTPGCARCGDVGCPYRLDQPWTQKVR 80
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 143 RSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE---WEEKAEKPK 265
+SKI DDN G + + K G I M K++ + K EKP+
Sbjct: 385 QSKINDDNEGKVIGCLIGKGGSIVNDMRSKTKAAIYISKGEKPR 428
>07_03_1339 + 25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 264 FGFSAFSSHSLLSYMDLQISPAFLAISVT 178
F FS SSHS+ + DLQ + L SVT
Sbjct: 1168 FNFSIASSHSMERHQDLQRGISLLKTSVT 1196
>02_05_0396 -
28600855-28601475,28601579-28601761,28601970-28602129,
28602217-28602795,28603044-28603618,28604161-28604176,
28605566-28605663,28605774-28606286
Length = 914
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 342 FLGFLFFLYGTAAICIK*F*IYNVLFFGFSAFSSHSLLS 226
F+GF+ FLY I F +YN F FSSH +S
Sbjct: 500 FVGFVLFLYVLVPIAYWGFDLYNAK--TFPIFSSHLFMS 536
>12_02_0579 +
20764626-20765123,20765135-20766064,20767181-20767275,
20767342-20767384,20767869-20768231
Length = 642
Score = 26.6 bits (56), Expect = 5.3
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 267 FFGFSAFSSHSLLSYMDLQISPAFLAISVTFNPGLSSFIFDLALFNHNKYADIGLFG 97
F GF F L + L+ +PA I+V F+P S+IF+ NK D G+ G
Sbjct: 554 FKGFIPFDDRKSLLRLLLKNAPALEKITVKFDP---SYIFETPKEARNK-IDFGMPG 606
>03_05_0506 +
25010059-25010089,25010606-25010654,25010812-25010887,
25011450-25011560
Length = 88
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 80 FKMT-DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIW 214
FK+T +K +R SAY ++ +IK +NP + E A + W
Sbjct: 8 FKVTPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNW 53
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 249 FSSHSLLSYMDLQISPAFLAISVTFNPGLSSFI 151
F + + S + + P F+A +V NPG+ F+
Sbjct: 67 FLGYVISSTQEAAVLPPFVAFAVRMNPGIWEFV 99
>08_02_0168 - 13640894-13641973
Length = 359
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 295 NANGGGPVEKKKKTQK 342
N+N GGPV KK +Q+
Sbjct: 242 NSNSGGPVHKKSSSQR 257
>04_03_0070 + 10677677-10679989
Length = 770
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 334 FSFFSLRDRRHLH*MILNLQCIVLWLFRL 248
F +LRD H H +LNL C V L RL
Sbjct: 372 FGSKALRDLEHKHPWMLNLACQVHGLSRL 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,511,966
Number of Sequences: 37544
Number of extensions: 183372
Number of successful extensions: 497
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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