Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30965.Seq
(349 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 86 9e-18
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 51 2e-07
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 5e-07
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 1e-06
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 49 1e-06
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 47 5e-06
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 5e-06
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-05
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 44 3e-05
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 43 8e-05
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 1e-04
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 1e-04
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 42 1e-04
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 2e-04
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 2e-04
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 41 2e-04
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 41 2e-04
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 40 4e-04
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 40 6e-04
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 38 0.002
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.002
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.005
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 37 0.005
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 36 0.007
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.021
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 34 0.028
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 31 0.26
SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094) 30 0.59
SB_24670| Best HMM Match : DivIC (HMM E-Value=2) 29 0.78
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06) 27 3.2
SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30) 27 3.2
SB_20428| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_17356| Best HMM Match : DUF590 (HMM E-Value=0) 27 3.2
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 27 5.5
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24) 26 9.7
SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77) 26 9.7
SB_36278| Best HMM Match : Homeobox (HMM E-Value=4.8e-30) 26 9.7
SB_15248| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21) 26 9.7
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 85.8 bits (203), Expect = 9e-18
Identities = 38/63 (60%), Positives = 49/63 (77%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKA--E 256
K + PKR MSAY+LWLN R +IKD NPG+ VTE++K AGE+W+++ DKS+WEEKA E
Sbjct: 537 KDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKAAIE 596
Query: 257 KPK 265
K K
Sbjct: 597 KQK 599
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 51.2 bits (117), Expect = 2e-07
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Frame = +2
Query: 59 IKIHI*GFKMTDKP--KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD- 229
+ + + G K T KP KRPM+A+++W +AR K+ D P L E++K G++W+ + D
Sbjct: 50 LPVRVNGIK-TQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLNDS 108
Query: 230 -KSEWEEKAEK 259
K + E+AE+
Sbjct: 109 EKKPFIEEAER 119
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 50.0 bits (114), Expect = 5e-07
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAE 256
K +KPKR +SAY ++N R +K DNP ++K GE+W M DK+++++ A+
Sbjct: 97 KDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQYQDMAK 156
Query: 257 KPK 265
K K
Sbjct: 157 KDK 159
Score = 35.1 bits (77), Expect = 0.016
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAE 256
K +KPK SAY +L R K++ + + + +K + E W++M +K + +KA
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQKAG 66
Query: 257 KPK 265
K K
Sbjct: 67 KDK 69
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAE 256
K + KRPM+A+++W R KI +NP + +EI+K+ G W+ + DK + E+A+
Sbjct: 322 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAK 381
Query: 257 K 259
K
Sbjct: 382 K 382
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAE 256
K + KRPM+A+++W R KI +NP + +EI+K+ G W+ + DK + E+A+
Sbjct: 5 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAK 64
Query: 257 K 259
K
Sbjct: 65 K 65
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 46.8 bits (106), Expect = 5e-06
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAEK 259
KRPM+++++W R K ++NP L EI+K G+ W + DK + EKAE+
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAER 149
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 46.8 bits (106), Expect = 5e-06
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
D+ KRPM+A+++W R K+ DNP + +EI+K+ G W+ + ++ +
Sbjct: 787 DRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQEK 835
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAE 256
K K KRPM+++++W SAR K+ + P + E++K G++WR S +K + ++A
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRMLSAAEKQPYVDEAA 165
Query: 257 K 259
+
Sbjct: 166 R 166
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 89 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAEK 259
T++ KRPM+A+++W R ++ D NP L E++K G WR++ K + ++AE+
Sbjct: 363 TERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRALNSTQKRPFVDEAER 421
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAE 256
K + PK P++ Y+ +LN R K++ +NP L E+ + G +W + K + E+AE
Sbjct: 172 KDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAE 231
Query: 257 KPK 265
K K
Sbjct: 232 KDK 234
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 43.6 bits (98), Expect = 5e-05
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAE 256
K D KRPM+AY++W R +I ++ P + +EI+K+ G W S+ +K + E+A+
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSLTLDEKQPYVEEAK 62
Query: 257 K 259
+
Sbjct: 63 R 63
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 42.7 bits (96), Expect = 8e-05
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 89 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAEKP 262
++K KRP++A++LW R I ++NP + +I++K G W+ + +K+ + E+A+K
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEEEKAYYFEEAKKL 75
Query: 263 K 265
K
Sbjct: 76 K 76
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 42.3 bits (95), Expect = 1e-04
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAEK 259
KRPM+A+++W R K+ +++P + EI+K+ G+ W+ S +K + E++E+
Sbjct: 46 KRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSESEKRPFVEESER 100
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 42.3 bits (95), Expect = 1e-04
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAE 256
KRPM+ +++W R +I +NPG+ ++K G W+ S+ +K + EKA+
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKLSVEEKEPYIEKAK 62
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAEKPK 265
++PK P+++Y + R+K+ P LK TE+A K + WR M + K + E+ E+ K
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEERKKAYTEQYEEEK 209
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 107 PMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE--W--EEKAEKPK 265
P+SA+ LW N AR + NP + ++ KK W+ + +K + W +EK E K
Sbjct: 230 PLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEKGKKTWIKKEKTEMRK 286
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +2
Query: 92 DKPKRPMSAYLLW---LNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAE 256
+KPK P++ Y+ + LNS R +K +P L EI K G+ W S+ +K ++ ++AE
Sbjct: 192 NKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQKFLDEAE 251
Query: 257 KPK 265
+ K
Sbjct: 252 EDK 254
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPKNNTL* 280
KRPM+A+++W + R ++ +NP L ++I+K G WR + + + + AE N L
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKFFAEAKLLNELH 67
Query: 281 I*NH 292
+ H
Sbjct: 68 MIEH 71
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPKNNTL* 280
KRPM+A+++W + R ++ +NP L ++I+K G WR + + + + AE N L
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKFFAEAKLLNELH 67
Query: 281 I*NH 292
+ H
Sbjct: 68 MIEH 71
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 41.1 bits (92), Expect = 2e-04
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 223
D KRP++++++W R + +NP ++ EI+K G+ WR M
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKM 51
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 98 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
P++P+ Y+ + ++K+ NP K+ +I K G++WR + D + +E E K
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDDAEKQQEYNEAVK 83
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 40.3 bits (90), Expect = 4e-04
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
K+ +P +P+SAY ++ ++ I+ NP + EIAK G++W ++ ++ +
Sbjct: 920 KIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQK 971
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAE 256
D+ + + + LWL R +I+++NP + ++ K A + W+ + +K W EKA+
Sbjct: 327 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVWNEKAK 383
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 95 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
K KRPM+A+++W RS I P EI+ + GEIW + + +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQ 147
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAE 256
KR S YLL+ + R I+ ++P EI++ GE WR S K+E+E KA+
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQ 89
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAE 256
KR S YLL+ + R I+ ++P EI++ GE WR S K+E+E KA+
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQ 1322
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 36.7 bits (81), Expect = 0.005
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAEK 259
KRPM+A+++W R + P + +EI+K G W++M D K + EKA++
Sbjct: 10 KRPMNAFMVWSKERRRIKSQECPRMHNSEISKILGCEWKAMKDELKQPYIEKAKE 64
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 36.7 bits (81), Expect = 0.005
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKI--KDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
K DKPKRP +AY L+L + R ++ K G K+ + AGE WR M D+ +
Sbjct: 572 KDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSL---AGERWREMSDEDK 622
Score = 35.9 bits (79), Expect = 0.009
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIK-----DDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAEK 259
KR SAY+ + + R+K+K P K E+AK AGE W+ + D K + KAE
Sbjct: 497 KRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPYVAKAEA 556
Query: 260 PKNNTL 277
K L
Sbjct: 557 DKQRYL 562
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 36.3 bits (80), Expect = 0.007
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPKNN 271
D+ + + + LWL R +I+++NP + ++ K A + W+ + E+K EK ++
Sbjct: 34 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGL---DSVEKKLEKCYDD 90
Query: 272 TL 277
TL
Sbjct: 91 TL 92
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 34.7 bits (76), Expect = 0.021
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 95 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 223
K KRP A+ + K+K++NP LK EI K + W ++
Sbjct: 305 KHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANL 347
Score = 32.7 bits (71), Expect = 0.084
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +2
Query: 98 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPKN 268
P++P + L++ +KIK +N G+ +I ++ G WR++ SE EE K ++
Sbjct: 374 PRKPPRHFSLFMRENFAKIKAENQGMSNPDIMRELGAKWRNL-PFSEREEIRRKSED 429
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 34.3 bits (75), Expect = 0.028
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
KRPM+A+++W + R K+ P + EI+K G W + ++ +
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEEEK 55
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 31.1 bits (67), Expect = 0.26
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
K PM+A+++ R NPG+ +E +K G W+ M E + +PK
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWK-MLTSEEKDPFIAEPK 63
>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
Length = 332
Score = 29.9 bits (64), Expect = 0.59
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 152 IKDDNPGL-KVTEIAKKAGEIWRSMYDKSEWEEKAEK 259
IK D L K TE AKKA E W+ + + W+E+ E+
Sbjct: 232 IKKDLKKLPKTTEEAKKAEERWQRLKTELNWDERYEE 268
>SB_24670| Best HMM Match : DivIC (HMM E-Value=2)
Length = 152
Score = 29.5 bits (63), Expect = 0.78
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 116 AYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEK 259
AY +W ++ ++ K +K TE+A K ++ ++ + EWE+K EK
Sbjct: 9 AYSVWQHAQQTLTKKREALVK-TELAGKNEKLPQAQEEVKEWEQKVEK 55
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 203 GEIWRSMYDKSEWEEKAEKPK 265
GE W M+DKS E+ EKPK
Sbjct: 71 GETWPQMHDKSGTIERFEKPK 91
>SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 170 GLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPKNNTL 277
G K ++ K+AG + D + EE+ E+ K+N L
Sbjct: 741 GRKARKVTKRAGTAFVGSIDNDDEEEEEEQEKSNDL 776
>SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)
Length = 631
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 186 SVTFNPGLSSFIFDLALFNH 127
SVTFNPG SS +F + + N+
Sbjct: 525 SVTFNPGQSSVVFTIDIANN 544
>SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)
Length = 227
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 270 LFFGFSAFSSHSLLSYMDLQISPAFLAISVTFNPGLSSFIFDLALFNH 127
LF+G H++ S DL+ P +L + PGL S I + LF H
Sbjct: 98 LFWGLCIIDPHAIQSKEDLEQIPLWLNHYMHSFPGL-SVILETFLFKH 144
>SB_20428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 348 PAFLGFLFFLYGTAAI 301
P+FLG L FLYG A I
Sbjct: 108 PSFLGLLVFLYGVATI 123
>SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)
Length = 982
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 348 PAFLGFLFFLYGTAAI 301
P+FLG L FLYG A I
Sbjct: 443 PSFLGLLVFLYGVATI 458
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 223
D +RPM+A++++ R+ + +P ++K GE W ++
Sbjct: 514 DHIRRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWWYAL 557
>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 537
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 320 STGPP-PFALNDSKSTMYCSLAFPP 249
+TG P P AL ++++T+YCS P
Sbjct: 274 TTGKPNPVALGNARATLYCSATAEP 298
>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
Length = 1669
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 241 GRKGGKAKEQYIVDLESFNANGGGPVEKKKKTQKR 345
G GG ++E D+ + N NG +K+KT+KR
Sbjct: 985 GGSGGSSQEDTETDVSNVNGNG-----RKRKTRKR 1014
>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
Length = 738
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 199 SRRNLEVHV*QKRMGRKGGKAKEQYIVDLESFNANGGGPVEKKKKTQKR 345
+R N + + RM RK GKA+ QY + + + +K KT KR
Sbjct: 298 NRLNKRMRIYINRMRRKHGKARRQYNIRVRILRRQ--ITILRKNKTAKR 344
>SB_36278| Best HMM Match : Homeobox (HMM E-Value=4.8e-30)
Length = 166
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 125 LWLNSARSKIKDDNPGLKVT 184
+W + R+K K NPG+ VT
Sbjct: 94 IWFQNRRTKWKKQNPGMDVT 113
>SB_15248| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)
Length = 325
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -2
Query: 279 YNVLFFGFSAFSSHSLLSYMDLQISPAFLAISVTFNPGLSSFIF 148
YNVL+ S L++ + L I + ++ F+P L++F++
Sbjct: 260 YNVLYLYLQFASRPPLVTVIKLGIISRAVTVTSYFHPALNAFLY 303
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,948,981
Number of Sequences: 59808
Number of extensions: 202329
Number of successful extensions: 684
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -