Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30965.Seq
(349 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 58 2e-09
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 58 2e-09
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 58 2e-09
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 57 4e-09
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 46 7e-06
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 46 7e-06
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 46 1e-05
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 40 6e-04
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 40 6e-04
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 40 6e-04
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 40 6e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 37 0.005
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 37 0.005
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 37 0.005
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 37 0.005
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 37 0.005
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 36 0.011
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 35 0.018
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 35 0.018
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 35 0.018
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 28 1.6
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z69661-5|CAA93495.2| 346|Caenorhabditis elegans Hypothetical pr... 27 3.7
U80444-11|AAB37793.2| 304|Caenorhabditis elegans Hypothetical p... 27 3.7
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 27 4.9
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 27 4.9
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 27 4.9
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 4.9
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 4.9
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 27 4.9
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 27 4.9
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 27 4.9
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 27 4.9
AF025452-8|AAB70940.1| 324|Caenorhabditis elegans Serpentine re... 27 4.9
Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z49913-3|CAA90144.1| 378|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z46828-2|CAA86857.1| 434|Caenorhabditis elegans Hypothetical pr... 26 8.5
U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin... 26 8.5
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 58.0 bits (134), Expect = 2e-09
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAE 256
K + PKR SAY+ W ++R+++K+D G V ++AKK G W++M DK +WEEKAE
Sbjct: 551 KDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEEKAE 608
Query: 257 KPKN 268
+ K+
Sbjct: 609 EDKS 612
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKP 262
K + PKR MSA+ W+ R +IK PG+ V ++AK AG W + DKS WE+KA
Sbjct: 23 KDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADD 80
Query: 263 K 265
K
Sbjct: 81 K 81
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKP 262
K + PKR MSA+ W+ R +IK PG+ V ++AK AG W + DKS WE+KA
Sbjct: 23 KDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADD 80
Query: 263 K 265
K
Sbjct: 81 K 81
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 56.8 bits (131), Expect = 4e-09
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAE 256
K ++PKR +AY++W N+ R+ +K+D G + ++AKKAG W+SM DK EW +KA
Sbjct: 556 KDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWNDKAA 613
Query: 257 KPK 265
+ K
Sbjct: 614 QDK 616
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 46.0 bits (104), Expect = 7e-06
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
D KRPM+A+++W R K+ DNP + +EI+K+ G W+ + ++ +
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEK 94
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 46.0 bits (104), Expect = 7e-06
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = +2
Query: 77 GFKMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
G K D+ KRPM+A+++W R K+ +NP + +EI+K+ G W+ + ++ +
Sbjct: 53 GKKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEK 106
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 45.6 bits (103), Expect = 1e-05
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
K ++ KRPM+A+++W R KI + P + EI+K+ G WRS+ D+ +
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEK 139
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 98 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAEKPKN 268
PKR +SA+ + R +I+ +P KV ++A++ G++W+ K +E+KA+ K+
Sbjct: 134 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKD 192
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 149 KIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAEK 259
K K N ++VTEI+KK E W++M D K + E A+K
Sbjct: 63 KKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 101
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 98 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAEKPKN 268
PKR +SA+ + R +I+ +P KV ++A++ G++W+ K +E+KA+ K+
Sbjct: 133 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKD 191
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 149 KIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAEK 259
K K N ++VTEI+KK E W++M D K + E A+K
Sbjct: 64 KKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 102
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 98 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAEKPKN 268
PKR +SA+ + R +I+ +P KV ++A++ G++W+ K +E+KA+ K+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKD 193
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 149 KIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAEK 259
K K N ++VTEI+KK E W++M D K + E A+K
Sbjct: 64 KKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 102
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 98 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAEKPKN 268
PKR +SA+ + R +I+ +P KV ++A++ G++W+ K +E+KA+ K+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKD 193
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 149 KIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAEK 259
K K N ++VTEI+KK E W++M D K + E A+K
Sbjct: 64 KKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 102
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE---WEEKAEKPK 265
KRPM+A+++W R KI P + + I+K G W+ M + + +EE++ K
Sbjct: 179 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 236
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE---WEEKAEKPK 265
KRPM+A+++W R KI P + + I+K G W+ M + + +EE++ K
Sbjct: 176 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 233
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE---WEEKAEKPK 265
KRPM+A+++W R KI P + + I+K G W+ M + + +EE++ K
Sbjct: 282 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 339
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE---WEEKAEKPK 265
KRPM+A+++W R KI P + + I+K G W+ M + + +EE++ K
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 387
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE---WEEKAEKPK 265
KRPM+A+++W R KI P + + I+K G W+ M + + +EE++ K
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 387
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 98 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAEKPK 265
P+RP+ Y+ + K++ +NP ++ +I K G+ W + D KS ++ + E K
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEK 83
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 34.7 bits (76), Expect = 0.018
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 86 MTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAE 256
MT K + S Y+L+ R +I +NP E++K G W+ + + K +E +AE
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAE 1503
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 34.7 bits (76), Expect = 0.018
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 86 MTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAE 256
MT K + S Y+L+ R +I +NP E++K G W+ + + K +E +AE
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAE 1503
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 34.7 bits (76), Expect = 0.018
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 86 MTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAE 256
MT K + S Y+L+ R +I +NP E++K G W+ + + K +E +AE
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAE 133
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAEKPK 265
+RPM+A++++ R + P ++K GE W S+ K+E+ + A + K
Sbjct: 844 RRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVK 900
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAEKPK 265
+RPM+A++++ R + P ++K GE W S+ K+E+ + A + K
Sbjct: 844 RRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVK 900
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAEKPK 265
+RPM+A++++ R + P ++K GE W S+ K+E+ + A + K
Sbjct: 79 RRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVK 135
>Z69661-5|CAA93495.2| 346|Caenorhabditis elegans Hypothetical
protein F48F7.7 protein.
Length = 346
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -1
Query: 244 FPFAFV--IHGPPDFACFFGYLRY 179
FPFAF I PP F F G++RY
Sbjct: 106 FPFAFPLPIECPPSFEGFHGHVRY 129
>U80444-11|AAB37793.2| 304|Caenorhabditis elegans Hypothetical
protein F26B1.1 protein.
Length = 304
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 231 KANGKKRRKSQRTIHCRFRII*CKWRRSRREKKENPKTR 347
K KKR+K+Q+ C I K +++R +KKE K++
Sbjct: 49 KKESKKRKKTQKEEDCDSESIKQKKKKARVKKKEVRKSK 87
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 161 DNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
DN G KVTE + W +MY + W+ K + K
Sbjct: 2370 DNQGSKVTEFFDE----WETMYHEMIWQRKLQDRK 2400
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 161 DNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
DN G KVTE + W +MY + W+ K + K
Sbjct: 2349 DNQGSKVTEFFDE----WETMYHEMIWQRKLQDRK 2379
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 161 DNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
DN G KVTE + W +MY + W+ K + K
Sbjct: 2405 DNQGSKVTEFFDE----WETMYHEMIWQRKLQDRK 2435
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 161 DNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
DN G KVTE + W +MY + W+ K + K
Sbjct: 2359 DNQGSKVTEFFDE----WETMYHEMIWQRKLQDRK 2389
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 161 DNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
DN G KVTE + W +MY + W+ K + K
Sbjct: 2359 DNQGSKVTEFFDE----WETMYHEMIWQRKLQDRK 2389
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 161 DNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
DN G KVTE + W +MY + W+ K + K
Sbjct: 2370 DNQGSKVTEFFDE----WETMYHEMIWQRKLQDRK 2400
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 161 DNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
DN G KVTE + W +MY + W+ K + K
Sbjct: 2359 DNQGSKVTEFFDE----WETMYHEMIWQRKLQDRK 2389
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 161 DNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
DN G KVTE + W +MY + W+ K + K
Sbjct: 2349 DNQGSKVTEFFDE----WETMYHEMIWQRKLQDRK 2379
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 161 DNPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPK 265
DN G KVTE + W +MY + W+ K + K
Sbjct: 2405 DNQGSKVTEFFDE----WETMYHEMIWQRKLQDRK 2435
>AF025452-8|AAB70940.1| 324|Caenorhabditis elegans Serpentine
receptor, class i protein31 protein.
Length = 324
Score = 26.6 bits (56), Expect = 4.9
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -2
Query: 348 PAFLGFLFFLYGTAAICIK*F*IYNVLFFGFSAFSSHSLLSYMDLQISPAFLAISVTFNP 169
P L + +++ GT AIC+ IY +LF + L + + + + I+ F P
Sbjct: 10 PWHLIYHYYISGTIAICLNLLVIYLILFHSGKLDNFRFYLLAFQIWCTASDVNIAFLFQP 69
Query: 168 GLSSFIFD-LALFNHNKYAD 112
F+F LA + H + D
Sbjct: 70 ---IFLFQILAGYGHGWFYD 86
>Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical
protein F47G4.6 protein.
Length = 128
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 95 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAEKPKN 268
K R SAY L+ +S K P +I++K W S+ +K ++++ EK +
Sbjct: 48 KKIRSTSAYALFFRERQSLEKRAAPYATFGQISQKIARQWDSLTEEEKKAYKQRCEKNRK 107
Query: 269 NTL 277
++
Sbjct: 108 TSI 110
>Z49913-3|CAA90144.1| 378|Caenorhabditis elegans Hypothetical
protein ZK938.4 protein.
Length = 378
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -1
Query: 244 FPFAFVI-H-GPPDFACFFGYLRYF 176
FPF+F + H PP F G++RYF
Sbjct: 107 FPFSFQLPHWAPPSFEGDLGFIRYF 131
>Z46828-2|CAA86857.1| 434|Caenorhabditis elegans Hypothetical
protein R03D7.4 protein.
Length = 434
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 194 KKAGEIWRSMYDKSEWEEKAEKPKNNTL 277
+K+G WR MYD+ EK +K +N+ L
Sbjct: 293 EKSGWTWREMYDR--LVEKKQKKENDKL 318
>U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
a protein.
Length = 906
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 164 NPGLKVTEIAKKAGEIWRSMYDKSEWEEKAEKPKNNTL 277
N G K+ A G +WRS +D S KAE N +
Sbjct: 343 NEGAKLNGFAN-GGAMWRSAFDMSSKVHKAEFDLNKQI 379
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,384,289
Number of Sequences: 27780
Number of extensions: 168394
Number of successful extensions: 535
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -