Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30965.Seq
(349 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 25 0.34
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 25 0.34
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 4.2
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 4.2
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 5.5
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 21 5.5
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 20 7.3
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 20 7.3
DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450 monoo... 20 7.3
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 20 9.6
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 20 9.6
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 20 9.6
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 24.6 bits (51), Expect = 0.34
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 125 LWLNSARSKIKDDNPGLKV 181
+W + R+K K NPGL V
Sbjct: 54 IWFQNRRTKWKKQNPGLDV 72
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 24.6 bits (51), Expect = 0.34
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 256 KAKEQYIVDLESFNANGGGPVEKKKK 333
K QY V +++FN G GP+ ++++
Sbjct: 1048 KTYTQYSVVVQAFNKVGSGPMSEERR 1073
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.0 bits (42), Expect = 4.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1
Query: 253 RLFFPFAFVI 224
R FFPF+F+I
Sbjct: 364 RFFFPFSFLI 373
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.0 bits (42), Expect = 4.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 40 FCY*GGRARNAYQ 2
+CY GG AR AY+
Sbjct: 954 WCYYGGDARPAYR 966
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.6 bits (41), Expect = 5.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 232 FVIHGPPDFACFFGYL 185
++ H PD +FGYL
Sbjct: 319 YLSHVDPDVVQYFGYL 334
Score = 20.6 bits (41), Expect = 5.5
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 338 WVFFFFSTGPPPFALNDSKSTMYCSLAFPPFLPI 237
W S PPP A N ++T ++ P LP+
Sbjct: 757 WQPLSVSIPPPPSAQNVPQNTNSQAIPRIPILPM 790
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 20.6 bits (41), Expect = 5.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 232 FVIHGPPDFACFFGYL 185
++ H PD +FGYL
Sbjct: 25 YLSHVDPDVVQYFGYL 40
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 20.2 bits (40), Expect = 7.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 301 NGGGPVEKKKKTQKRG 348
NGG P EK+ +T G
Sbjct: 14 NGGTPEEKRPRTAFSG 29
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 20.2 bits (40), Expect = 7.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -1
Query: 253 RLFFPFAFVIHGPPDFACFFGYL 185
R+FFPF F + + F Y+
Sbjct: 406 RVFFPFLFAVLNVTYWIMFAEYI 428
>DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 548
Score = 20.2 bits (40), Expect = 7.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 283 LESFNANGGGPVEKKKK 333
++ FNAN VEK +K
Sbjct: 154 IDLFNANARSVVEKMRK 170
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 19.8 bits (39), Expect = 9.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 259 AKEQYIVDLESFN 297
+ E+ IVDL++FN
Sbjct: 509 SNEEQIVDLKAFN 521
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 240 HSLLSYMDLQISPAFLAIS 184
H LL +M L P+F S
Sbjct: 338 HELLGHMPLLADPSFAQFS 356
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 19.8 bits (39), Expect = 9.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 259 AKEQYIVDLESFN 297
+ E+ IVDL++FN
Sbjct: 509 SNEEQIVDLKAFN 521
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,150
Number of Sequences: 438
Number of extensions: 2607
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 7936320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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