Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30965.Seq
(349 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 50 3e-07
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 49 7e-07
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 48 1e-06
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 48 1e-06
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 48 1e-06
At3g28730.1 68416.m03587 structure-specific recognition protein ... 46 5e-06
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 45 2e-05
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 41 2e-04
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 2e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 41 3e-04
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 33 0.069
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 30 0.37
At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin; gl... 29 1.1
At5g64170.1 68418.m08057 dentin sialophosphoprotein-related cont... 27 2.6
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 27 2.6
At3g03530.1 68416.m00353 phosphoesterase family protein low simi... 27 3.4
At1g23690.1 68414.m02991 expressed protein contains Pfam profile... 27 3.4
At3g03540.1 68416.m00355 phosphoesterase family protein similar ... 26 6.0
At1g23660.1 68414.m02984 expressed protein contains Pfam profile... 26 6.0
At3g10760.1 68416.m01295 myb family transcription factor contain... 26 7.9
At2g04620.1 68415.m00470 cation efflux family protein potential ... 26 7.9
At1g71120.1 68414.m08207 GDSL-motif lipase/hydrolase family prot... 26 7.9
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = +2
Query: 95 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD--KSEWEEKAEKPK 265
KPK+P+SAYL++ N R+ +K +N V E+AK AGE W+++ + K+ +++ A+K K
Sbjct: 245 KPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNK 301
Score = 36.3 bits (80), Expect = 0.006
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAEKPK 265
KRP + Y+LW +++K NP E + G W+ S +K +EEK + K
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADK 186
Score = 34.7 bits (76), Expect = 0.017
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
+KPK+P S+Y L+ AR + +++PG+ + + W + ++ +
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEK 418
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 49.2 bits (112), Expect = 7e-07
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +2
Query: 95 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE--WEEKAEKPKN 268
KPK P+SA+L++ N R+ ++++N V E+AK GE W+++ DK + +E+ A+K K
Sbjct: 254 KPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKE 311
Query: 269 NTL 277
L
Sbjct: 312 TYL 314
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 101 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWEEKAEKPK 265
KRP S+Y+LW +++K +NP E + G W+S+ DK +EE+ + K
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEK 195
Score = 33.9 bits (74), Expect = 0.030
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 92 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR--SMYDKSEWEEKAEK 259
+KPK+P S+Y L+ R K+ ++ PG + W+ S +K + KA K
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAK 434
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 253
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +EEKA
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 254 EKPK 265
K K
Sbjct: 108 AKRK 111
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 253
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +EEKA
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 254 EKPK 265
K K
Sbjct: 108 AKRK 111
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD--KSEWEEKA 253
K +KPKRP SA+ +++ R K +NP K V + K AG+ W+S+ D K+ + KA
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 254 EKPK 265
EK K
Sbjct: 93 EKRK 96
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 46.4 bits (105), Expect = 5e-06
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMY--DKSEWEEKAE 256
K + PKR MS ++ + R IK ++PG+ E+ K G+ WR M DK +E KA+
Sbjct: 557 KDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQ 616
Query: 257 KPK 265
K
Sbjct: 617 VDK 619
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD--KSEWEEKA 253
K +KPKRP SA+ +++ R K+++P K V + K GE W+S+ D K+ + KA
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 254 EKPK 265
+K K
Sbjct: 90 DKRK 93
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 41.1 bits (92), Expect = 2e-04
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = +2
Query: 89 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 238
++KPKRP++A+ ++++ R K ++ G + AK GE W+S+ ++ +
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEK 161
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 89 TDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 223
T PK+P +A+ +L+ R + +++NP +K + EI K GE W++M
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 40.7 bits (91), Expect = 3e-04
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWEEKA 253
K ++PKRP SA+ ++L R + NP K V + K AG W++M DK+ + KA
Sbjct: 30 KDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKA 89
Query: 254 EKPK 265
E K
Sbjct: 90 ESRK 93
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 32.7 bits (71), Expect = 0.069
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 83 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYDK 232
K ++PK+P S + ++L+ R + NP K V + + AG+ W++M ++
Sbjct: 29 KDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 30.3 bits (65), Expect = 0.37
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 116 AYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIW----RSMYDKSEWEEKAEKPKNNTL 277
A L WL+ + KD PG K+ +A E W R+ + + ++EE + N +
Sbjct: 451 AVLAWLSILAHRNKDTKPGDKLVSVADVVKEYWATYGRNFFSRYDYEECESEGANKMI 508
>At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin;
glycine-rich protein 17 (GRP17) PMID:11431566; function:
pollen recognition (PMID:10655594)
Length = 543
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 184 GDSQKSRRNLEVHV*QKRMGRKGGKAKEQYIVDLESFNANGGGPVEKKKKTQ 339
G S+ + L+ + +K+ G GG E+ + E + GGG K KK++
Sbjct: 241 GKSKSGKGKLKAKL-EKKKGMSGGSESEEGMSGSEGGMSGGGGSKSKSKKSK 291
>At5g64170.1 68418.m08057 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 566
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 311 PPPFALNDSKSTMYCSLAFPPFLPIR 234
PP FA N KS+ S+ FP PI+
Sbjct: 369 PPSFAANTKKSSKTDSMVFPDAAPIQ 394
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 268 VLWLFRLFFPFAFVIHG--PPDFACFFGYLR 182
+LWLFR F ++ H PD A ++ +++
Sbjct: 5 ILWLFRKIFIITYIFHASCSPDKAGYYSFMK 35
>At3g03530.1 68416.m00353 phosphoesterase family protein low
similarity to SP|P95246 Phospholipase C 2 precursor (EC
3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
profile PF04185: Phosphoesterase family
Length = 538
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +2
Query: 128 WLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEE 247
W + + DD+P V+E K E++ ++ +W E
Sbjct: 252 WFDLLSTPANDDHPSHDVSEGQKLVKEVYEALRSSPQWNE 291
>At1g23690.1 68414.m02991 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 273
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 191 AKKAGEIWRSMYDKSEWEEKAEKPKNNT 274
AKK G++WR+ K W + K K T
Sbjct: 52 AKKQGKLWRAAEKKKPWYDAPPKVKVTT 79
>At3g03540.1 68416.m00355 phosphoesterase family protein similar to
SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3)
{Mycobacterium tuberculosis}; contains Pfam profile
PF04185: Phosphoesterase family
Length = 521
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +2
Query: 128 WLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSEWEE 247
W + + DD+P V+E K E++ ++ +W E
Sbjct: 251 WYDLLLNPANDDHPSHDVSEGQKLVKEVYEALRSSPQWNE 290
>At1g23660.1 68414.m02984 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 264
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 194 KKAGEIWRSMYDKSEWEEKAEKPKNNT 274
++ GEIWR+ +K W + K K T
Sbjct: 45 RREGEIWRAAEEKHPWYDAPAKVKVTT 71
>At3g10760.1 68416.m01295 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 335
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 271 YIVDLESFNANGGGPV 318
Y+ DLES NANGG V
Sbjct: 311 YVEDLESANANGGRTV 326
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 258 FSAFSSHSLLSYMDLQISPAFLAISVTFNPGLSSFIFDLA 139
FS S +SLL + L+ SP+F +F L SF+F L+
Sbjct: 68 FSLRSLYSLLPF--LRSSPSFSLFPFSFLVSLLSFLFSLS 105
>At1g71120.1 68414.m08207 GDSL-motif lipase/hydrolase family protein
similar to family II lipases EXL3 GI:15054386 from
[Arabidopsis thaliana]; contains Pfam profile PF00657:
GDSL-like Lipase/Acylhydrolase
Length = 362
Score = 25.8 bits (54), Expect = 7.9
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = -2
Query: 255 SAFSSHSLLSYMDLQISPAFLAISVTFNPGLSSF---IFDLALFNHNK----YADIGLFG 97
S+ SS LL + L ISP LA S + P + +F IFD ++NK AD +G
Sbjct: 2 SSSSSMDLLMCLLLLISPVVLAKSSSTVPAIFTFGDSIFDAGNNHYNKNCTAQADFPPYG 61
Query: 96 LSVILNP 76
S P
Sbjct: 62 SSFFHRP 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,795,589
Number of Sequences: 28952
Number of extensions: 154391
Number of successful extensions: 495
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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