Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30962.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   4.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   4.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.1  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 117 ASYRVLLKTALSKTDITLVFFINYLHKGKLLN 22
           A    +L+   S   + L +F N L + KLLN
Sbjct: 67  AKITTILQRYCSVLLVFLTYFFNILFRKKLLN 98


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 117 ASYRVLLKTALSKTDITLVFFINYLHKGKLLN 22
           A    +L+   S   + L +F N L + KLLN
Sbjct: 63  AKITTILQRYCSVLLVFLTYFFNILFRKKLLN 94


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 170  SCFSSLPIDNFPKSFLNLDQFTFYGELAEPFI 265
            S F   P+      +LN ++ TF+ EL E ++
Sbjct: 1173 SWFYDGPLIRGEVHYLNRNEETFWNELIEQYL 1204


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 170  SCFSSLPIDNFPKSFLNLDQFTFYGELAEPFI 265
            S F   P+      +LN ++ TF+ EL E ++
Sbjct: 1173 SWFYDGPLIRGEVHYLNRNEETFWNELIEQYL 1204


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 192 IGSDEKHDSKKSFAKDK 142
           +G DE  D+KK   K K
Sbjct: 250 VGEDEDEDTKKEDKKKK 266


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 58  ENQCNVRFR 84
           E+QC+VRFR
Sbjct: 348 EDQCDVRFR 356


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,428
Number of Sequences: 336
Number of extensions: 1915
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)