Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30962.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   3.6  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   4.8  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   6.3  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   6.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   8.4  

>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 149 FAKDFFESCFSSLPIDNFPKS-FLNLD 226
           F K FFE  F  +P +NF +S F N D
Sbjct: 233 FRKFFFELGFEEMPTNNFVESGFWNFD 259


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 498 WKNFFILSAILNSWSVLFR*LQ 433
           W+N+ ++S  +N WS + R L+
Sbjct: 628 WENYMLISVDVNKWSEVIRALR 649


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 113  EALYLQIEDTLSFAKDFFESCFSSLPIDNFPKSFLNLDQFTFY 241
            E L   + D  S   +    C+ +LPI+++ KS   +D + F+
Sbjct: 996  ELLIKVLSDLGSTEDEEISDCYLALPIEDYAKSLTEVD-YNFF 1037


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 410 NSKRVYQN*-SYLKSTLQEFKMADKIKKFFQ 499
           ++K ++ N  SY  S    +K AD+++KFFQ
Sbjct: 411 DAKYIFDNCRSYNDSNTTYYKNADRLEKFFQ 441


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 346 RVYGKRISERFMKPATSATIEQLKESVSKLKLP 444
           ++ G    ERF+K  T A + Q  +S +  +LP
Sbjct: 601 KLSGNETIERFIKKFTQAVLFQSTKSTASFQLP 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,611
Number of Sequences: 5004
Number of extensions: 33438
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)