Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30962.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0320 + 20181560-20182063,20182513-20182853,20183159-201838...    27   6.3  
03_06_0418 + 33785482-33785870,33786098-33786173,33786985-337870...    27   6.3  
05_01_0484 - 4033169-4033867,4033988-4034051,4035720-4035839,403...    27   8.4  

>05_04_0320 +
           20181560-20182063,20182513-20182853,20183159-20183819,
           20183954-20184112
          Length = 554

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 464 ILGVCSLGSFSFDT-LSLSCSIVADVAGFMNLSEILLPYT 348
           I G C LG     T     C++  D+ G +NL  +  PYT
Sbjct: 193 ISGRCLLGKEVMGTKFDEVCNLFRDIEGGVNLMSVFFPYT 232


>03_06_0418 +
           33785482-33785870,33786098-33786173,33786985-33787071,
           33788096-33788143
          Length = 199

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -2

Query: 168 SKKSFAKDKVSSI*RYRASYRVLLKTALSKTDITLVFFINYLHKGKL 28
           SKKS  K K   I R +  Y +  KT  S  D  L    NY+ + KL
Sbjct: 98  SKKSDVKKKEEEITRLQEKYGLGSKTPSSAPDAPLELICNYVLRIKL 144


>05_01_0484 -
           4033169-4033867,4033988-4034051,4035720-4035839,
           4036631-4036827,4037000-4037170,4037292-4037432,
           4037519-4037602,4037852-4037989,4038111-4038136,
           4038292-4038346,4039094-4039198,4039303-4039371,
           4040038-4040112
          Length = 647

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  LSKTDITLVFFINYLHKGKLLNFHGHIE 4
           L+  D TL+  IN  H GK +   GH++
Sbjct: 115 LTARDATLILLINLFHAGKDIPNAGHVQ 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,574,351
Number of Sequences: 37544
Number of extensions: 169705
Number of successful extensions: 325
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)