Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30962.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    27   5.7  

>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +2

Query: 50  FIKKTNV-MSVFDNAVFNNTLYEALYLQIEDTLSFAKDFFESCFSSL---PIDNFPKSFL 217
           FIKK  V MS+ D + F+N      +  +ED L   K F ES    +     D+FP + L
Sbjct: 720 FIKKCAVSMSMRDFSHFSNVDVHLEFGSVEDILFLKKKFLESNTRQIYKFTCDSFPVARL 779

Query: 218 NLDQF 232
            LD+F
Sbjct: 780 -LDEF 783


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 77  VFDNAVFNNTLYEALYLQIEDTLSFAKDFFESCFSSLP 190
           V D  +   +  +    ++E+ + F+KD F +C  S P
Sbjct: 110 VGDGCIDRESFNDIAVFELEEPIEFSKDIFPACLPSAP 147


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 78  FSTTLFLITLYT----KLCIFKSRILCLLQKTSLNRVFHHFLSIIF 203
           F  + +L T+ T    ++ +F   + C+L+K+  N VF+ +L ++F
Sbjct: 11  FKNSPYLFTMNTIGAFQIPLFLVSVYCILKKSPWNMVFYKWLILVF 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,483
Number of Sequences: 27780
Number of extensions: 181003
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)