Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30962.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   1.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   4.1  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 68  VMSVFDNAVFNNTLYEALYLQIEDTLSFAKDFFESCFSSLPI--DNFP 205
           + S+ +N  +NN  Y+ LY      L +  ++ E     +PI   NFP
Sbjct: 82  ISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNFP 129


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 68  VMSVFDNAVFNNTLYEALYLQIEDTLSFAKDFFESCFSSLPI--DNFP 205
           + S+ +N  +NN  Y+ LY      L +  ++ E     +PI   NFP
Sbjct: 82  ISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNFP 129


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 134 EDTLSFAKDFFESCFSSL 187
           E+ L  AKDF E  FSS+
Sbjct: 63  EEILLHAKDFLEQYFSSI 80


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 68  VMSVFDNAVFNNTLYEALYLQIEDTLSFAKDFFESCFSSLPI--DNFP 205
           + S+ +N  +NN  Y+ LY      L +  ++ E     +PI   NFP
Sbjct: 82  ISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVPIYCGNFP 129


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 96  LITLYTKLCIFKSRILCLLQKTSLNRVFHHFLSI 197
           ++ +  ++C+ ++   C+L K   + V +H  +I
Sbjct: 29  IMRILKEVCVLQANRACILIKDLFDNVHNHIQNI 62


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 96  LITLYTKLCIFKSRILCLLQKTSLNRVFHHFLSI 197
           ++ +  ++C+ ++   C+L K   + V +H  +I
Sbjct: 12  IMRILKEVCVLQANRACILIKDLFDNVHNHIQNI 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,645
Number of Sequences: 438
Number of extensions: 1992
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)