Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30962.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18690.1 68417.m02764 hypothetical protein similar to tumor-r...    32   0.25 
At5g16350.1 68418.m01911 expressed protein                             28   3.0  
At3g27020.1 68416.m03380 oligopeptide transporter OPT family pro...    27   5.3  
At5g41000.1 68418.m04984 oligopeptide transporter OPT family pro...    27   7.0  

>At4g18690.1 68417.m02764 hypothetical protein similar to
           tumor-related protein [Nicotiana glauca x Nicotiana
           langsdorffii] GI:688423
          Length = 368

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 151 KRQSILDLKIQSFV*SVIKNSVVENGHYIGFL-YKLPT*RKIVK 23
           KR S+L LK+ SF   +IK  +V  G+Y   L  KLP  R + K
Sbjct: 276 KRSSLLMLKLHSFYTKIIKTCMVNFGNYFERLPVKLPNNRHVEK 319


>At5g16350.1 68418.m01911 expressed protein
          Length = 488

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 452 CSLGS-FSFDTLSLSCSIVADVAGFMNLSEILLPYTRHDRQ 333
           C  G+ FSF  L LS S+  D   ++N S+ ++  T+H  Q
Sbjct: 327 CRWGNYFSFIILPLSISLETDPLVYLNKSKAMMARTKHSYQ 367


>At3g27020.1 68416.m03380 oligopeptide transporter OPT family
           protein similar to iron-phytosiderophore transporter
           protein yellow stripe 1 [Zea mays] GI:10770865; contains
           Pfam profile PF03169: OPT oligopeptide transporter
           protein
          Length = 676

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 122 YLQIEDTLSFAKDFFESCFSSLPIDNFPKSFLNLDQFTFYGELAEPFI 265
           YL +    S  K FF     +   DNFP   L L + TFY + +  +I
Sbjct: 220 YLSLSLIWSCFKWFFSGIGDACGFDNFPTLGLTLFKNTFYFDFSPTYI 267


>At5g41000.1 68418.m04984 oligopeptide transporter OPT family
           protein contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 670

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 122 YLQIEDTLSFAKDFFESCFSSLPIDNFPKSFLNLDQFTFYGELAEPFI 265
           YL +    S  K FF     +   D+FP   L L + TFY + +  FI
Sbjct: 217 YLSLSLVWSCFKWFFSGIGGACGFDHFPTLGLTLFKNTFYFDFSPTFI 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,286,199
Number of Sequences: 28952
Number of extensions: 158620
Number of successful extensions: 362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)