Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30961.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   3e-08
SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)                   29   2.9  
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)                  28   5.0  
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)             28   6.6  
SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)          27   8.7  

>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
 Frame = +1

Query: 4   SVKVHPVVLFQIVDAYERRN--ADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE-HADQVE 174
           +V VHP+VL  +VD + R        RV+G LLG+  KGV++V NCF VP  E   DQ  
Sbjct: 10  TVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFDEDDRDQNV 69

Query: 175 --AELNYAMDVYELNRRVN 225
              + +Y  ++Y + ++VN
Sbjct: 70  WFLDHDYLENMYAMFKKVN 88


>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAEL 183
           V+V  + + +I+   E   +    V G LLG      +E+TNCF  P +K   D+ + ++
Sbjct: 18  VQVDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDV 77

Query: 184 NYAMDVYELNRRVNSSESIVGWW 252
           NY M+V    R VN     VGW+
Sbjct: 78  NYQMEVMRRLRAVNIDHLHVGWY 100


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 384 CVPLGVPNGKQGCMFTPVDVTLTCYEPEXVGLQVCQKTVS 503
           CV +GVP   +G MF+ +   +    PE VG+ V Q+T S
Sbjct: 27  CVKMGVPGKTEGTMFSQIPCEVKLTGPEKVGVDVLQRTKS 66



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 169 VEAELNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSI 300
           V  EL YA  +YEL+++ N +E IVG   + +   T   +++ I
Sbjct: 1   VAVELEYAKSMYELSQKANPNEQIVGCVKMGVPGKTEGTMFSQI 44


>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
          Length = 219

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -1

Query: 238 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 59
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR  P R   L   ++F
Sbjct: 36  YYNYRHVRCSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP-RSSNLHNYINF 92

Query: 58  DVRMRPQFEIK 26
               R  F+ K
Sbjct: 93  GRLRRRYFDSK 103


>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -1

Query: 238 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 59
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR+ P R   L   ++F
Sbjct: 90  YYNYRHVRCSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP-RSSNLHNYINF 146

Query: 58  D-VRMRP 41
             +R RP
Sbjct: 147 GRLRRRP 153


>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
          Length = 270

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 332 YSGHFAGWRSNGFTCICL 385
           ++GH   W SNG TC+ L
Sbjct: 201 FNGHTYSWHSNGVTCVLL 218


>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
          Length = 419

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 6   CEGPSCCFISNCGRIRTSKCRF 71
           C G + CFI    R R  KCRF
Sbjct: 78  CRGSNDCFIDKVHRNRCQKCRF 99


>SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)
          Length = 1052

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 343 VSRVTWXGSRHSRE*YSCITEEWLV--TSLPVPTNQQYFQRN 224
           VSR ++ G   S++ Y  ITE+WL    S+P P   +   RN
Sbjct: 479 VSRQSYAGLLWSKQFYYYITEDWLKGDPSMPPPPRARLSGRN 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,256,084
Number of Sequences: 59808
Number of extensions: 461529
Number of successful extensions: 1529
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)