Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30957.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    28   1.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.5  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   7.9  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   7.9  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 407 FSGQKYXEAINLYTAAIQLNPQSAL--LFAKRGQVY 508
           +  +KY EAI  YT AI L   SAL   ++ R   Y
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATY 69


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 419 KYXEAINLYTAAIQLNPQSALLFAKRGQVY*NXTNQM 529
           +Y +A++ Y+ AI+LNP  + ++   G +Y +  NQ+
Sbjct: 633 QYQDALDAYSRAIRLNPYISEVWYDLGTLYESCHNQI 669


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 185
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 342 TRRSLKKKEMSQMKSALKQ*EHSRDKN 422
           T+RSLKKK++ +++      + SRDKN
Sbjct: 11  TKRSLKKKKIRKIEKPSLVSKTSRDKN 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,036
Number of Sequences: 5004
Number of extensions: 39254
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)